Gene
RNA
| Item | Value |
|---|---|
| gene id | G438946 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000310 |
| NCBI id | null |
| chromosome length | 5141163 |
| location | 136617 ~ 137075 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU503771 | True | 459 | lncRNA | 0.36 | 1 | 136617 | 137075 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000310_00083324_00113068 | NA | coding | downstream | 23511 | 81228 ~ 113106 (-) |
| CI01000310_00032999_00038804 | NA | coding | downstream | 97487 | 32950 ~ 39130 (-) |
| CI01000310_00151988_00156136 | TMEM151B, TMEM151BB | coding | upstream | 13539 | 150614 ~ 156136 (-) |
| CI01000310_00369180_00401704 | NA | coding | upstream | 231485 | 368560 ~ 401862 (-) |
| CI01000310_00415541_00454442 | PLCB1 | coding | upstream | 278206 | 415281 ~ 454442 (-) |
| CI01000310_00593564_00595487 | BMP2, BMP2A | coding | upstream | 456451 | 593526 ~ 595937 (-) |
| CI01000310_00597640_00601450 | GDF3 | coding | upstream | 460430 | 597505 ~ 601575 (-) |
| G438945 | NA | non-coding | downstream | 139 | 136160 ~ 136478 (-) |
| G438859 | NA | non-coding | downstream | 57979 | 77762 ~ 78638 (-) |
| G438850 | NA | non-coding | downstream | 73841 | 62365 ~ 62776 (-) |
| G438848 | NA | non-coding | downstream | 74648 | 61698 ~ 61969 (-) |
| G438947 | NA | non-coding | upstream | 199 | 137274 ~ 137618 (-) |
| G439187 | NA | non-coding | upstream | 341510 | 478585 ~ 525679 (-) |
| G439197 | NA | non-coding | upstream | 371718 | 508793 ~ 509500 (-) |
| G439240 | NA | non-coding | upstream | 478423 | 615498 ~ 615756 (-) |
| G439244 | NA | non-coding | upstream | 485331 | 622406 ~ 622607 (-) |
| G439012 | NA | other | upstream | 195180 | 332255 ~ 334054 (-) |
| G439398 | NA | other | upstream | 802060 | 939135 ~ 941564 (-) |
| G439473 | NA | other | upstream | 977285 | 1114360 ~ 1114833 (-) |
| G441306 | NA | other | upstream | 2689709 | 2826784 ~ 2827204 (-) |
| CI01000310_03135568_03137756 | NA | other | upstream | 2997557 | 3134632 ~ 3137756 (-) |
