G439115


Basic Information

Item Value
gene id G439115
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 651976 ~ 653356 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU503981
TGGTGAAAACTGGTTGAACTTCTAAAGTGAAAGTGAAAGTGTTTCCACGCAGACTCCATTTTGTGAAGAAAGCACATGAGCTGTTTGTGAATAATGTGAATCCGTTTGAGAACAGATCAGTTTAATGCTGTTATCTAGAGACTGAATGGATTTATGAACTGAATAAAGTTTGTGTTTGATGTTCTTCATTGTTGAGACAGAGCACTGCCTGTAAAATGAGTCTCTGTGAGAAGAGAGATGAGGAGAATGATGTTCAGACACAGAAAGCAGCATCTCCAGAACCCAGCTGTGTGTCTATGAAAAGCGACGCATCCATGAGAATCCCTCCTGATCTCAGTGATGGAGCAGTGACCTCTGACCCTGAAACTGCCTGCAAAAGGAGTGTCTGTGAGAGGAAAGAGGAGGAGGATGATGTTCAGACACGTAAAGCAGCACCTCCAGAACCCAGCTGTGTGTCTATGAAGAGTGACGCATCCATGAGAATCCCTCCTCTTCTCAGTGATGGAGCAGTGACCTCTGACCCTGAAGTGAAAAGACGCAACGTAATCANNNNNNNNNNNNNNNGTCTGACCTGCACTGACTCTGACTGTCAAACCCTCATCAAGAAGCATGACACAGAAGCCCTGCAGAGAGTCAAAGACCAACACAAAACTAGCATGAAGAACAAGTATGAGAGCTTATTTGAGGGAATCAAACTAGAAGAGAATCAAACCCTCCTGAACAGGATCTACACACAGCTCTACATCATAGAGGGAGAGAGTGAAGGGGTGAATGAAGAACATGAGGTTTTACAGATGGAGAAATCAGCCAGAACACAAGACACTCCAATCTACTGCAATGACATCTTTAAACACTTACATCAACC
>TU503984
TGGTGAAAACTGGTTGAACTTCTAAAGTGAAAGTGAAAGTGTTTCCACGCAGACTCCATTTTGTGAAGAAAGCACATGAGCTGTTTGTGAATAATGTGAATCCGTTTGAGAACAGATCAGTTTAATGCTGTTATCTAGAGACTGAATGGATTTATGAACTGAATAAAGTTTGTGTTTGATGTTCTTCATTGTTGAGACAGAGCACTGCCTGTAAAATGAGTCTCTGTGAGAAGAGAGATGAGGAGAATGATGTTCAGACACAGAAAGCAGCATCTCCAGAACCCAGCTGTGTGTCTATGAAAAGCGACGCATCCATGAGAATCCCTCCTGATCTCAGTGATGGAGCAGTGACCTCTGACCCTGAAACTGCCTGCAAAAGGAGTGTCTGTGAGAGGAAAGAGGAGGAGGATGATGTTCAGACACGTAAAGCAGCACCTCCAGAACCCAGCTGTGTGTCTATGAAGAGTGACGCATCCATGAGAATCCCTCCTCTTCTCAGTGATGGAGCAGTGACCTCTGACCCTGAAGTGAAAAGACGCAACGTAATCAGATCAGTGACACCCCGTCTGACCTGCACTGACTCCGACTGTCAGACC
>TU503983
GAAAGTGTTTCCACGCAGACTCCATTTTGTGAAGAAAGCACATGAGCTGTTTGTGAATAATGTGAATCCGTTTGAGAACAGATCAGTTTAATGCTGTTATCTAGAGACTGAATGGATTTATGAACTGAATAAAGTTTGTGTTTGATGTTCTTCATTGTTGAGACAGAGCACTGCCTGTAAAATGAGTCTCTGTGAGAAGAGAGATGAGGAGAATGATGTTCAGACACAGAAAGCAGCATCTCCAGAACCCAGCTGTGTGTCTATGAAAAGCGACGCATCCATGAGAATCCCTCCTGATCTCAGTGATGGAGCAGTGACCTCTGACCCTGAAACTGCCTGCAAAAGGAGTGTCTGTGAGAGGAAAGAGGAGGAGGATGATGTTCAGACACGTAAAGCAGCACCTCCAGAACCCAGCTGTGTGTCTATGAAGAGTGACGCATCCATGAGAATCCCTCCTCTTCTCAGTGATGGAGCAGTGACCTCTGACCCTGAAGTGAAAAGACGCAACGTAATCANNNNNNNNNNNNNNNGTCTGACCTGCACTGACTCTGACTGTCAAACCCTCATCAAGAAGCATGACACAGAAGCCCTGCAGAGAGTCAAAGACCAACACAAAACTAGCATGAAGAACAAGTATGAGAGCTTATTTGAGGGAATCAAACTAGAAGAGAATCAAACCCTCCTGAACAGGATCTACACACAGCTCTACATCATAGAGGGAGAGAGTGAAGGGGTGAATGAAGAACATGAGGTTTTACAGATGGAGAAATCAGCCAGAACACAAGACACTCCAATCTACTGCAATGACATCTTTAAACACTTACATCAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU503981 False 362 TUCP 0.43 3 651976 653356
TU503984 True 343 TUCP 0.46 3 651976 653337
TU503983 True 362 TUCP 0.44 3 651976 653356

Neighbor

gene id symbol gene type direction distance location
CI01000310_00629492_00629967 NA coding upstream 19126 629492 ~ 630832 (+)
CI01000310_00513998_00524767 HAO1 coding upstream 124352 513998 ~ 525606 (+)
CI01000310_00495852_00504711 NA coding upstream 145247 495852 ~ 504711 (+)
CI01000310_00298547_00317035 NA coding upstream 331603 298547 ~ 318355 (+)
CI01000310_00215248_00279025 SNTG2 coding upstream 370310 215248 ~ 279648 (+)
CI01000310_00717405_00718485 BDKRB2 coding downstream 26213 717405 ~ 718563 (+)
CI01000310_00721054_00727169 BDKRB1 coding downstream 29645 720837 ~ 729312 (+)
CI01000310_00738120_00739067 NA coding downstream 46726 737918 ~ 739815 (+)
CI01000310_00744256_00746991 NA coding downstream 52186 743378 ~ 747105 (+)
CI01000310_00784238_00790497 NA coding downstream 93046 784238 ~ 791969 (+)
G439111 NA non-coding upstream 39217 610436 ~ 610741 (+)
G439072 NA non-coding upstream 149840 498773 ~ 500118 (+)
G439054 NA non-coding upstream 159435 426712 ~ 490523 (+)
G439052 NA non-coding upstream 230941 416616 ~ 419017 (+)
G438913 NA non-coding upstream 418589 229796 ~ 231369 (+)
G439135 NA non-coding downstream 8423 699615 ~ 699921 (+)
G439141 NA non-coding downstream 12456 703648 ~ 748971 (+)
G439134 NA non-coding downstream 24322 715514 ~ 746104 (+)
G439138 NA non-coding downstream 61078 752270 ~ 752679 (+)
G439148 NA non-coding downstream 65147 756339 ~ 756796 (+)
CI01000310_00648731_00650082 NAPB other upstream 405 648566 ~ 650159 (+)
CI01000310_01207513_01226750 CDC5L other downstream 530814 1207057 ~ 1227194 (+)
CI01000310_01508712_01511125 FAM167A other downstream 810694 1508341 ~ 1513341 (+)
G439845 NA other downstream 1220409 1911601 ~ 1912417 (+)
G440505 NA other downstream 2408225 3099417 ~ 3136328 (+)

Expression


Co-expression Network