G439289


Basic Information

Item Value
gene id G439289
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 792673 ~ 794492 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU504215
GCAGGAGTGTGACCCGAGGAACCTCAAACATGCGTCAATCCCGAAAAAAACAAACTCCGCCAAATATCGGATTATTATCTTAAACCCTTATTCACACTCCAAAAACTCTCCATGTTATAAATTAAGGATATAATCAATCAGATAACCCAGCAGGGACTCATGTGTTTGTCTTGTGGAGCCCTGTATAATCCAGCACCTCTCCATGGATTAAGCGCAGAGAAAAGCTGAATCGAATCATTCTGCTCGAGGAAGGTCGCGGCACCGGTTCAACATGCCCCTTCCGTTCGGATTAAAACTCAAGAGAACCAGAAGATACACGGTGTCCAGCAAAAGCTGCCTGGTCACCCGCATACAGCTGCTCAACGGCGAGTATGTGGAGTTCACGCTTTCGGTGGAGAGCACGGGCCAGGAATGTCTGGAGGCAGTCGCGCAGAGACTCGAGTTACGCGAG
>TU504217
GCAGGAGTGTGACCCGAGGAACCTCAAACATGCGTCAATCCCGAAAAAAACAAACTCCGCCAAATATCGGATTATTATCTTAAACCCTTATTCACACTCCAAAAACTCTCCATGTTATAAATTAAGGATATAATCAATCAGATAACCCAGCAGGGACTCATGTGTTTGTCTTGTGGAGCCCTGTATAATCCAGCACCTCTCCATGGATTAAGCGCAGAGAAAAGCTGAATCGAATCATTCTGCTCGAGGAAGGTCGCGGCACCGGTTCAACATGCCCCTTCCGTTCGGATTAAAACTCAAGAGAACCAGAAGATACACGGTGTCCAGCAAAAGCTGCCTGGTCACCCGCATACAGCTGCTCAACGGCGAGTATGTGGAGTTCACGCTTTCGGTGGAGAGCACGGGCCAGGAATGTCTGGAGGCAGTCGCGCAGAGACTCGAGTTACGCGAGGTAGGCTGCTGGACGTCCCCTGGCTACTACTTGGTTTAATCTGGTCGAAATCACCTTAACACACCATGGGCGTGTGTTTATTTTAGCTCGCTGGTGCCGTCTGGAGTCTAGGCTATTCTAGGACTGCAACCAAAATGCTGTCAAACACCCTAAATGCGTGTGTGCCAAGAATTCAGCCTGGACTAAGTGCACTTTGTTTGTATGCGGTCTGAATGTTGCTGCAAAGTCAGATTATCATATCTAGATGTAAATCGCCAGATGTTGAATGAGAATCACCCAGTACCAACTCATGAGAGTATATACTGTGGCTTTTAGTAGCCTAAAGTTCACTAGAGATTTAATCAGCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU504215 False 451 lncRNA 0.49 2 792673 794145
TU504217 True 798 lncRNA 0.47 2 792673 794492

Neighbor

gene id symbol gene type direction distance location
CI01000310_00784238_00790497 NA coding upstream 779 784238 ~ 791969 (+)
CI01000310_00744256_00746991 NA coding upstream 45568 743378 ~ 747105 (+)
CI01000310_00738120_00739067 NA coding upstream 52858 737918 ~ 739815 (+)
CI01000310_00721054_00727169 BDKRB1 coding upstream 63361 720837 ~ 729312 (+)
CI01000310_00717405_00718485 BDKRB2 coding upstream 74110 717405 ~ 718563 (+)
CI01000310_00861939_01046631 KLHL29 coding downstream 67447 861939 ~ 1046631 (+)
CI01000310_01103452_01164843 NA coding downstream 307385 1101821 ~ 1164974 (+)
CI01000310_01196439_01199290 NA coding downstream 401208 1195700 ~ 1199377 (+)
CI01000310_01207513_01226750 CDC5L coding downstream 412565 1207057 ~ 1227194 (+)
CI01000310_01257447_01269508 NA coding downstream 462835 1257327 ~ 1270033 (+)
G439148 NA non-coding upstream 35877 756339 ~ 756796 (+)
G439138 NA non-coding upstream 39994 752270 ~ 752679 (+)
G439141 NA non-coding upstream 43702 703648 ~ 748971 (+)
G439134 NA non-coding upstream 46569 715514 ~ 746104 (+)
G439298 NA non-coding downstream 125776 920268 ~ 923911 (+)
G439300 NA non-coding downstream 261055 1055547 ~ 1056332 (+)
G439457 NA non-coding downstream 300594 1095086 ~ 1095662 (+)
G439456 NA non-coding downstream 301663 1096155 ~ 1096516 (+)
G439115 NA other upstream 101481 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 143120 648566 ~ 650159 (+)
CI01000310_01508712_01511125 FAM167A other downstream 707394 1508341 ~ 1513341 (+)
G439845 NA other downstream 1117109 1911601 ~ 1912417 (+)
G440505 NA other downstream 2304925 3099417 ~ 3136328 (+)

Expression


Co-expression Network