G439541


Basic Information

Item Value
gene id G439541
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1197604 ~ 1198070 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU504539
AAAAAACGTAAAATATTTACGAATCTTATCATGTCTTAAAGATATATGTATAATTTCCCTTTTATCGTTTTGTAGATAAATGTAAGATCCCTAAACCCCACCCCGAACCTAAACCTACCCATTTTATACAGAATGTTAAAAGAATAAAACATAATGGGCAGAAATGTGTAGGAAAATGACAATTTTAGTAAAAATATAACATTAAAACGATATTTTGAGCCACTAATCCTACACCTACCCCTAAACCTACCCATAACCATTTCTTTAAACTACCTACTAATATAAATAAAAGAATGACAGACAAACAAGCGTAATCACAATAATTTATTTATTTATTTATTTTTTTGCGAAAATGTCAAAAGTGGTACCAAAAGTAGTTCAAATGATGATGAGTTCCAGTCACATTCCTCTCTGGCGGTAATAGTTTTTTATAGGGTACAGAGCAGAATTTAACTTATTAATCCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU504539 True 467 lncRNA 0.30 1 1197604 1198070

Neighbor

gene id symbol gene type direction distance location
CI01000310_01103452_01164843 NA coding upstream 32630 1101821 ~ 1164974 (+)
CI01000310_00861939_01046631 KLHL29 coding upstream 150973 861939 ~ 1046631 (+)
CI01000310_00784238_00790497 NA coding upstream 405710 784238 ~ 791969 (+)
CI01000310_00744256_00746991 NA coding upstream 450499 743378 ~ 747105 (+)
CI01000310_00738120_00739067 NA coding upstream 457789 737918 ~ 739815 (+)
CI01000310_01207513_01226750 CDC5L coding downstream 8987 1207057 ~ 1227194 (+)
CI01000310_01257447_01269508 NA coding downstream 59257 1257327 ~ 1270033 (+)
CI01000310_01394296_01394727 NA coding downstream 195019 1393089 ~ 1394908 (+)
CI01000310_01411744_01412226 NA coding downstream 213674 1411744 ~ 1412467 (+)
CI01000310_01414325_01452698 RUNX2, RUNX2A coding downstream 216255 1414325 ~ 1452698 (+)
G439519 NA non-coding upstream 34448 1162939 ~ 1163156 (+)
G439511 NA non-coding upstream 41841 1155294 ~ 1155763 (+)
G439507 NA non-coding upstream 46584 1150740 ~ 1151020 (+)
G439505 NA non-coding upstream 48648 1148611 ~ 1148956 (+)
G439565 NA non-coding downstream 63276 1261346 ~ 1261761 (+)
G439628 NA non-coding downstream 159828 1357898 ~ 1367503 (+)
G439631 NA non-coding downstream 167561 1365631 ~ 1366429 (+)
G439657 NA non-coding downstream 209637 1407707 ~ 1410605 (+)
G439679 NA non-coding downstream 324668 1522738 ~ 1523826 (+)
G439115 NA other upstream 506412 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 548051 648566 ~ 650159 (+)
CI01000310_01508712_01511125 FAM167A other downstream 303816 1508341 ~ 1513341 (+)
G439845 NA other downstream 713531 1911601 ~ 1912417 (+)
G440505 NA other downstream 1901347 3099417 ~ 3136328 (+)

Expression


Co-expression Network