G439628


Basic Information

Item Value
gene id G439628
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1357898 ~ 1367503 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU504642
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCACAATTCTTTCAATAGTAAAGACTTCAACATTGTTACAAAAGTTTTGTCACTTTTGATTAATTTAATGTGCCCTTGATGAATAAAAGTATTAATTTCTTACTGACCCCAGACTTTTGAACAGTAGTTGATCTGCAGTAACAGTAGGTTATTAAAAAGGCAAGTCGCACAATTAACTGCAATTTTCAAATTGATGATTCTTCAAGACAGTCAGACATTTTTTAACCTCTCATATAGTGACTTCAGCTAGTTTTAATACATATTCCTGCTCAAAAGACCAGCATATAAATCTTTTAGCAAAAACAGCATAAGATAAACATCATCTAAGAGTACTATTCAATTATCTAACAGTTCTGTAGCAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU504642 True 399 lncRNA 0.28 2 1357898 1367503

Neighbor

gene id symbol gene type direction distance location
CI01000310_01257447_01269508 NA coding upstream 87865 1257327 ~ 1270033 (+)
CI01000310_01207513_01226750 CDC5L coding upstream 130726 1207057 ~ 1227194 (+)
CI01000310_01196439_01199290 NA coding upstream 158521 1195700 ~ 1199377 (+)
CI01000310_01103452_01164843 NA coding upstream 192924 1101821 ~ 1164974 (+)
CI01000310_00861939_01046631 KLHL29 coding upstream 311267 861939 ~ 1046631 (+)
CI01000310_01394296_01394727 NA coding downstream 25586 1393089 ~ 1394908 (+)
CI01000310_01411744_01412226 NA coding downstream 44241 1411744 ~ 1412467 (+)
CI01000310_01414325_01452698 RUNX2, RUNX2A coding downstream 46822 1414325 ~ 1452698 (+)
CI01000310_01508712_01511125 FAM167A coding downstream 141209 1508341 ~ 1513341 (+)
CI01000310_01513690_01517791 NA coding downstream 146187 1513690 ~ 1518229 (+)
G439565 NA non-coding upstream 96137 1261346 ~ 1261761 (+)
G439541 NA non-coding upstream 159828 1197604 ~ 1198070 (+)
G439519 NA non-coding upstream 194742 1162939 ~ 1163156 (+)
G439511 NA non-coding upstream 202135 1155294 ~ 1155763 (+)
G439507 NA non-coding upstream 206878 1150740 ~ 1151020 (+)
G439657 NA non-coding downstream 40204 1407707 ~ 1410605 (+)
G439679 NA non-coding downstream 155235 1522738 ~ 1523826 (+)
G439704 NA non-coding downstream 194818 1562321 ~ 1562554 (+)
G439721 NA non-coding downstream 236394 1603897 ~ 1604107 (+)
G439723 NA non-coding downstream 237348 1604851 ~ 1605069 (+)
G439115 NA other upstream 666706 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 708345 648566 ~ 650159 (+)
G439845 NA other downstream 544098 1911601 ~ 1912417 (+)
G440505 NA other downstream 1731914 3099417 ~ 3136328 (+)

Expression


Co-expression Network