G439657


Basic Information

Item Value
gene id G439657
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1407707 ~ 1410605 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU504671
AACACAGATAGGAGCAGGATTATTAGGATGCGGTCACTTTAAGAGCGAATGCATGCAGAGATCATGCGTTTTCTCAAATGAAGACATCACCGACTATCGGGCAATACTTGCTTAAACGGGCATTTTTGTTACATAATTTGTCCGTTCAAGCACAGGAAGGCATGAAAGAGTGCTTAACTTAGTATTTGCACGCTGTAGCCGTGGCTTTCAGGGCACAAACTTTGGATGTTGAATGTCCCACACAGCGCGTGAGTATTCCCTTTCACGTGTTCTGGCACTTGAATATTTACACTGTAGGTTACAAAGCGTTCACGTTCATATTCTCACAACATTGCATTGTTAGAATTCATAAAAATGTTACCGGCCATCTGGCAACTGACACGGTTTCATGTACTCACCAACACCGATTTTTACTCACATTTGGTGCTTGGCGAGTGTTCATTTTAGGGCCTGTGCATACATATGATGGAGCTGATAACTCGTGAAGAGCATTTAAAATGTGTAAATGAATCAAAACAGCGGCAGGAATCCCTCCGTCACAAACACAAATGAAGATTTGCTGTGAGGAGACGTGGTTCTGATGCCTGTACATTACCGAACTGCCATGAGCAATATCGCAACTATGGCTGCGTTCCAGTTCGTTATGCCCTTCCCTCGCTAACTTCCCTCAGTCTCGTTGACTCGGATGTACGTCATTGGTTTACGTTGCATGAGTGCCCACTACTGGCGGAACCTTTGCAATGAAATCCCCTATGGAGTTGATTTATTATTTATTTTATTATTTATTCCATAGGTGTGTTAGGGTTGTTTTAAAAAATTAATTAATATATCATAGAGTGGGGTAAATTAAACGCGATATGCAGTGACATCACAATCTTGTTGCATTGTGGTATATGAGCTGCCTTAAGTGAAACGAAGTGGAATGCATTTCAAAATGGTGGCAGGGATTCCCCCGAGGGGAAGTGCTTAGTGAAGTTCGTGAGTGTGTGTCTAAAATTGAAGTGGAACGCAGCCTATGCCTATGTTTTCTTGAGCATTCTTTGAGTGTCCTTTTTAGGGTACGTCTTGTGACATCCATGTTCTGTGTTTGGTTCGTTTACATGTCTTTGGTTGGTGTTGCATTCATATTTCATTCGAACCGCATCGGAGTTTGTTTGACTTCACTTGTTTGGTGCGTATAGGGTTTGGATGGCAGCGTTCACACTTATTCAAATGAACCGCACTAACAGAGTAATCACACCAGAGTTCGTTTTAATCGAACCAAAGTGTGAACACAACCTTAAATTTGCCATGAAATGAAAGCTGCATTGAAATGATAATCTGCAGCTCTCAAATCTCATTCATACTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU504671 True 1350 lncRNA 0.42 2 1407707 1410605

Neighbor

gene id symbol gene type direction distance location
CI01000310_01394296_01394727 NA coding upstream 12799 1393089 ~ 1394908 (+)
CI01000310_01257447_01269508 NA coding upstream 137674 1257327 ~ 1270033 (+)
CI01000310_01207513_01226750 CDC5L coding upstream 180535 1207057 ~ 1227194 (+)
CI01000310_01196439_01199290 NA coding upstream 208330 1195700 ~ 1199377 (+)
CI01000310_01103452_01164843 NA coding upstream 242733 1101821 ~ 1164974 (+)
CI01000310_01411744_01412226 NA coding downstream 1139 1411744 ~ 1412467 (+)
CI01000310_01414325_01452698 RUNX2, RUNX2A coding downstream 3720 1414325 ~ 1452698 (+)
CI01000310_01508712_01511125 FAM167A coding downstream 98107 1508341 ~ 1513341 (+)
CI01000310_01513690_01517791 NA coding downstream 103085 1513690 ~ 1518229 (+)
CI01000310_01564875_01571307 TDH coding downstream 154270 1564875 ~ 1572028 (+)
G439628 NA non-coding upstream 40204 1357898 ~ 1367503 (+)
G439631 NA non-coding upstream 41278 1365631 ~ 1366429 (+)
G439565 NA non-coding upstream 145946 1261346 ~ 1261761 (+)
G439541 NA non-coding upstream 209637 1197604 ~ 1198070 (+)
G439519 NA non-coding upstream 244551 1162939 ~ 1163156 (+)
G439679 NA non-coding downstream 112133 1522738 ~ 1523826 (+)
G439704 NA non-coding downstream 151716 1562321 ~ 1562554 (+)
G439721 NA non-coding downstream 193292 1603897 ~ 1604107 (+)
G439723 NA non-coding downstream 194246 1604851 ~ 1605069 (+)
G439741 NA non-coding downstream 240407 1651012 ~ 1651387 (+)
G439115 NA other upstream 716515 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 758154 648566 ~ 650159 (+)
G439845 NA other downstream 500996 1911601 ~ 1912417 (+)
G440505 NA other downstream 1688812 3099417 ~ 3136328 (+)

Expression


Co-expression Network