G439679


Basic Information

Item Value
gene id G439679
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1522738 ~ 1523826 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU504698
TGGAATCTGTACAATACATATAAGCTTTGTATCATCTTCATAACAAAACTTTAGATGTTGCATAACATTTTAAACAACAGAACAGTGATAGAGATTTGAACTCGTAATGGCATGTCGCCTATCTAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGCAATGCTTGAAAATCTGGCACATTCCCTAAATCCATAAACACTGTGTAAAAAATAAATATCTGTACATCTCACTGCGGGACACATTTGCCCTCAGAGACAACTGTACTCTATTTTATGTGAGTTACAAAATAAAACACTTAACTATGCTGCTATTTACCCTGATCTGCCTTGTACACACCATGAACACGGTGTGTATCGGCCAGCTGATGTTAGTCCATTAAAATACAGTTTGAGGTTTAGACTGAGATGTAGCAATATTGCAAAACAAAATGAAAACTATTATCTTTCTATTTCAGAATCATAAGACCTGCGTCAAATCGAAAACAATAAAATTATGTTGATTTTTTGCTGGTGATTATTGAAGAGCAGCCTCATGAAACCAGATACTTTGACCATATGAGACAACGAGGAGTCGAGAAAACCATTCACAATCTGACATGATAAACAAAACAATAAATCCTCTGAATTACGAAGACACCAGACAAAATAAGACCAACATGTCATTAAAAAAAAAAAAAAAAAATAGATGGATAACAAAACGGATTAAATGTAAATATACCCGAATCTTCAGAATACCCTTTATGCTGTTAAATCATCAACTACGGCAAACCCATGCAAAATTACACAGACAATTATTTTTAAATATCCTTTTATGGGCTTCTCTCTCTTTTTTTGAAATATAAAATCGTAAAAGCTACTGAAACAGACGGTTTTTCATATCAAAGACACAGCCAAATGAAACAGTCAGATATCTAAAGCATAATATACCTTTTCAGATTTTGTACGTTTAGACAATACGTCACACAAAATTAAAAAATAAATTTATACCTAGATTTCTTGAATCCATTTTAACATTCGAATAAACGCAATACAATACAATCCATAGATCCAATCAAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU504698 True 1062 lncRNA 0.31 2 1522738 1523826

Neighbor

gene id symbol gene type direction distance location
CI01000310_01513690_01517791 NA coding upstream 4509 1513690 ~ 1518229 (+)
CI01000310_01508712_01511125 FAM167A coding upstream 11613 1508341 ~ 1513341 (+)
CI01000310_01414325_01452698 RUNX2, RUNX2A coding upstream 70040 1414325 ~ 1452698 (+)
CI01000310_01411744_01412226 NA coding upstream 110271 1411744 ~ 1412467 (+)
CI01000310_01394296_01394727 NA coding upstream 127830 1393089 ~ 1394908 (+)
CI01000310_01564875_01571307 TDH coding downstream 41049 1564875 ~ 1572028 (+)
CI01000310_01588365_01597469 NA coding downstream 62666 1586492 ~ 1597486 (+)
CI01000310_01638700_01644396 FNDC4B coding downstream 114874 1638700 ~ 1644598 (+)
CI01000310_01663192_01666886 NA coding downstream 139366 1663192 ~ 1667160 (+)
CI01000310_01674884_01675180 NA coding downstream 150418 1674244 ~ 1675265 (+)
G439657 NA non-coding upstream 112133 1407707 ~ 1410605 (+)
G439628 NA non-coding upstream 155235 1357898 ~ 1367503 (+)
G439631 NA non-coding upstream 156309 1365631 ~ 1366429 (+)
G439565 NA non-coding upstream 260977 1261346 ~ 1261761 (+)
G439541 NA non-coding upstream 324668 1197604 ~ 1198070 (+)
G439704 NA non-coding downstream 38495 1562321 ~ 1562554 (+)
G439721 NA non-coding downstream 80071 1603897 ~ 1604107 (+)
G439723 NA non-coding downstream 81025 1604851 ~ 1605069 (+)
G439741 NA non-coding downstream 127186 1651012 ~ 1651387 (+)
G439697 NA non-coding downstream 147056 1670882 ~ 1673466 (+)
CI01000310_01207513_01226750 CDC5L other upstream 283333 1207057 ~ 1227194 (+)
G439115 NA other upstream 831546 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 873185 648566 ~ 650159 (+)
G439845 NA other downstream 387775 1911601 ~ 1912417 (+)
G440505 NA other downstream 1575591 3099417 ~ 3136328 (+)

Expression


Co-expression Network