G439704


Basic Information

Item Value
gene id G439704
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1562321 ~ 1562554 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU504725
GGAGACTTCAAAACGATGGCGTGGCTGCCCACATTCGCTCTGCGTCTCCTTGACGACCGTGTAAACAATAACATGGAGACTGAACTGCAATCTTTGCTGGCTTTGTTGTCATTTTTATTTTTAGCAGTCATTGTGCAGTTAAACTCTGCATTTTTTTTTTTAATACTGCAGCTACCTACATGCGCTAGAGGCAACTGTTTACACTTGCAAACGCCATTTTAAAACGAAAACGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU504725 True 234 lncRNA 0.42 1 1562321 1562554

Neighbor

gene id symbol gene type direction distance location
CI01000310_01513690_01517791 NA coding upstream 44092 1513690 ~ 1518229 (+)
CI01000310_01508712_01511125 FAM167A coding upstream 51196 1508341 ~ 1513341 (+)
CI01000310_01414325_01452698 RUNX2, RUNX2A coding upstream 109623 1414325 ~ 1452698 (+)
CI01000310_01411744_01412226 NA coding upstream 149854 1411744 ~ 1412467 (+)
CI01000310_01394296_01394727 NA coding upstream 167413 1393089 ~ 1394908 (+)
CI01000310_01564875_01571307 TDH coding downstream 2321 1564875 ~ 1572028 (+)
CI01000310_01588365_01597469 NA coding downstream 23938 1586492 ~ 1597486 (+)
CI01000310_01638700_01644396 FNDC4B coding downstream 76146 1638700 ~ 1644598 (+)
CI01000310_01663192_01666886 NA coding downstream 100638 1663192 ~ 1667160 (+)
CI01000310_01674884_01675180 NA coding downstream 111690 1674244 ~ 1675265 (+)
G439679 NA non-coding upstream 38495 1522738 ~ 1523826 (+)
G439657 NA non-coding upstream 151716 1407707 ~ 1410605 (+)
G439628 NA non-coding upstream 194818 1357898 ~ 1367503 (+)
G439631 NA non-coding upstream 195892 1365631 ~ 1366429 (+)
G439565 NA non-coding upstream 300560 1261346 ~ 1261761 (+)
G439721 NA non-coding downstream 41343 1603897 ~ 1604107 (+)
G439723 NA non-coding downstream 42297 1604851 ~ 1605069 (+)
G439741 NA non-coding downstream 88458 1651012 ~ 1651387 (+)
G439697 NA non-coding downstream 108328 1670882 ~ 1673466 (+)
G439759 NA non-coding downstream 198838 1761392 ~ 1770560 (+)
CI01000310_01207513_01226750 CDC5L other upstream 322916 1207057 ~ 1227194 (+)
G439115 NA other upstream 871129 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 912768 648566 ~ 650159 (+)
G439845 NA other downstream 349047 1911601 ~ 1912417 (+)
G440505 NA other downstream 1536863 3099417 ~ 3136328 (+)

Expression


Co-expression Network