Item | Value |
---|---|
gene id | G439850 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000310 |
NCBI id | null |
chromosome length | 5141163 |
location | 1918468 ~ 1918808 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU504920 | True | 341 | lncRNA | 0.43 | 1 | 1918468 | 1918808 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000310_01887698_01893727 | CX23, GJE1 | coding | upstream | 24628 | 1887300 ~ 1893840 (+) |
CI01000310_01814975_01815586 | DUS23, DUSP23B, DUSP23, TP53I3 | coding | upstream | 102812 | 1814975 ~ 1815656 (+) |
CI01000310_01737635_01745606 | CHRNA2A, CHRNA2 | coding | upstream | 172781 | 1737635 ~ 1745687 (+) |
CI01000310_01723036_01723254 | NA | coding | upstream | 194918 | 1723036 ~ 1723550 (+) |
CI01000310_01693209_01696414 | NA | coding | upstream | 221597 | 1692729 ~ 1696871 (+) |
CI01000310_01941915_01945313 | TATDN3 | coding | downstream | 23107 | 1941915 ~ 1945642 (+) |
CI01000310_01947567_01956704 | ADCK3 | coding | downstream | 28759 | 1947567 ~ 1956760 (+) |
CI01000310_01981356_01982015 | NA | coding | downstream | 62167 | 1980975 ~ 1982224 (+) |
CI01000310_01992187_02003475 | SLC5A6B | coding | downstream | 72832 | 1991640 ~ 2003475 (+) |
CI01000310_02017340_02026116 | NA | coding | downstream | 98532 | 2017340 ~ 2026116 (+) |
G439849 | NA | non-coding | upstream | 4042 | 1914105 ~ 1914426 (+) |
G439847 | NA | non-coding | upstream | 10436 | 1907363 ~ 1908032 (+) |
G439846 | NA | non-coding | upstream | 12081 | 1905965 ~ 1906387 (+) |
G439844 | NA | non-coding | upstream | 13288 | 1904769 ~ 1905180 (+) |
G439843 | NA | non-coding | upstream | 14904 | 1899366 ~ 1903564 (+) |
G439826 | NA | non-coding | downstream | 38347 | 1957155 ~ 1959063 (+) |
G439859 | NA | non-coding | downstream | 46862 | 1965670 ~ 1965988 (+) |
CI01000310_02042995_02059321 | SMC6 | non-coding | downstream | 139962 | 2041882 ~ 2059325 (+) |
G439894 | NA | non-coding | downstream | 255922 | 2174730 ~ 2175039 (+) |
G439896 | NA | non-coding | downstream | 257483 | 2176291 ~ 2176580 (+) |
G439845 | NA | other | upstream | 6051 | 1911601 ~ 1912417 (+) |
CI01000310_01508712_01511125 | FAM167A | other | upstream | 405127 | 1508341 ~ 1513341 (+) |
CI01000310_01207513_01226750 | CDC5L | other | upstream | 679063 | 1207057 ~ 1227194 (+) |
G439115 | NA | other | upstream | 1227276 | 651976 ~ 653356 (+) |
CI01000310_00648731_00650082 | NAPB | other | upstream | 1268915 | 648566 ~ 650159 (+) |
G440505 | NA | other | downstream | 1180609 | 3099417 ~ 3136328 (+) |