G439850



Basic Information


Item Value
gene id G439850
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1918468 ~ 1918808 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU504920
AGAGTTAGTAACTTTCATTTAGAGCTGAACTATTCATTTAACAATAATGCATAATGCATCCCCTGTTATGACACATTATATGATTTGGTAACCAACCAGAATGACTTTTCCGTAAGTCTAATAACGTCATTGCTTCTAATCATGTTATATCACAAGTAGTGCACAAATAGGAAGCAGGACGAAATCCCCTCGCAGACCCCCTCATTCTGTCATACTACATGTAATGGAAGATTGGCTCTGGAACCCCAAAGGTCCTTCCCACTTTACCTCCCAGCGGCAGGCTTTACCCGCTCAGACCAGACACCAGCGAAAACACCATCCGGACACCTGCGAAAACAGAG

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU504920 True 341 lncRNA 0.43 1 1918468 1918808

Neighbor


gene id symbol gene type direction distance location
CI01000310_01887698_01893727 CX23, GJE1 coding upstream 24628 1887300 ~ 1893840 (+)
CI01000310_01814975_01815586 DUS23, DUSP23B, DUSP23, TP53I3 coding upstream 102812 1814975 ~ 1815656 (+)
CI01000310_01737635_01745606 CHRNA2A, CHRNA2 coding upstream 172781 1737635 ~ 1745687 (+)
CI01000310_01723036_01723254 NA coding upstream 194918 1723036 ~ 1723550 (+)
CI01000310_01693209_01696414 NA coding upstream 221597 1692729 ~ 1696871 (+)
CI01000310_01941915_01945313 TATDN3 coding downstream 23107 1941915 ~ 1945642 (+)
CI01000310_01947567_01956704 ADCK3 coding downstream 28759 1947567 ~ 1956760 (+)
CI01000310_01981356_01982015 NA coding downstream 62167 1980975 ~ 1982224 (+)
CI01000310_01992187_02003475 SLC5A6B coding downstream 72832 1991640 ~ 2003475 (+)
CI01000310_02017340_02026116 NA coding downstream 98532 2017340 ~ 2026116 (+)
G439849 NA non-coding upstream 4042 1914105 ~ 1914426 (+)
G439847 NA non-coding upstream 10436 1907363 ~ 1908032 (+)
G439846 NA non-coding upstream 12081 1905965 ~ 1906387 (+)
G439844 NA non-coding upstream 13288 1904769 ~ 1905180 (+)
G439843 NA non-coding upstream 14904 1899366 ~ 1903564 (+)
G439826 NA non-coding downstream 38347 1957155 ~ 1959063 (+)
G439859 NA non-coding downstream 46862 1965670 ~ 1965988 (+)
CI01000310_02042995_02059321 SMC6 non-coding downstream 139962 2041882 ~ 2059325 (+)
G439894 NA non-coding downstream 255922 2174730 ~ 2175039 (+)
G439896 NA non-coding downstream 257483 2176291 ~ 2176580 (+)
G439845 NA other upstream 6051 1911601 ~ 1912417 (+)
CI01000310_01508712_01511125 FAM167A other upstream 405127 1508341 ~ 1513341 (+)
CI01000310_01207513_01226750 CDC5L other upstream 679063 1207057 ~ 1227194 (+)
G439115 NA other upstream 1227276 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 1268915 648566 ~ 650159 (+)
G440505 NA other downstream 1180609 3099417 ~ 3136328 (+)

Expression



Co-expression Network