G439894


Basic Information

Item Value
gene id G439894
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 2174730 ~ 2175039 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU504969
GTAAATCTCAGGTTGGAGAAAGTTGAGTGTTATTATTTATAAGCTATTGTAATTCGTATAGTCTTCTCCAATCAGACAGTGGGTTCCATTGTGACAACTTACCCCATTCCTTCTGATAAACGCATATGTTTGAGGTCTTACCGAGATAATAACCCACATCTAGCAGGATTTTCGGTGCTCCTCCGTTTAACTGATATAGCACAGACCCCAGACAGAATATGAGGAGAGCGGTCAGACAGAAGCTCAAATCCCGGCGCGATATTCGGAGCAGAACCACCGCGAGCCAGTTTTCCCTCCGGTTCCTCACGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU504969 True 310 lncRNA 0.46 1 2174730 2175039

Neighbor

gene id symbol gene type direction distance location
CI01000310_02164574_02165132 DDO coding upstream 9432 2164574 ~ 2165298 (+)
CI01000310_02115219_02147202 NA coding upstream 27422 2115219 ~ 2147308 (+)
CI01000310_02098738_02105250 FOXO3, FOXO3A coding upstream 69159 2098549 ~ 2105571 (+)
CI01000310_02087211_02095576 LACE1A, LACE1 coding upstream 78801 2087211 ~ 2095929 (+)
CI01000310_02042995_02059321 SMC6 coding upstream 115405 2041882 ~ 2059325 (+)
CI01000310_02482727_02513419 KCNK5, KCNK5A coding downstream 307030 2482069 ~ 2513779 (+)
CI01000310_02549824_02559417 SHPRH coding downstream 374785 2549824 ~ 2559491 (+)
CI01000310_02562834_02569144 NA coding downstream 387350 2562389 ~ 2569257 (+)
CI01000310_02572928_02575251 FBXO30A, FBXO30 coding downstream 397889 2572928 ~ 2575356 (+)
CI01000310_02639022_02649415 NA coding downstream 463983 2639022 ~ 2649666 (+)
G439859 NA non-coding upstream 208742 1965670 ~ 1965988 (+)
G439826 NA non-coding upstream 215667 1957155 ~ 1959063 (+)
G439850 NA non-coding upstream 255922 1918468 ~ 1918808 (+)
G439849 NA non-coding upstream 260304 1914105 ~ 1914426 (+)
G439896 NA non-coding downstream 1252 2176291 ~ 2176580 (+)
G439924 NA non-coding downstream 74238 2249277 ~ 2292491 (+)
G439936 NA non-coding downstream 132976 2308015 ~ 2308268 (+)
G439935 NA non-coding downstream 133792 2308831 ~ 2309114 (+)
G439929 NA non-coding downstream 134655 2309694 ~ 2313067 (+)
G439845 NA other upstream 262313 1911601 ~ 1912417 (+)
CI01000310_01508712_01511125 FAM167A other upstream 661389 1508341 ~ 1513341 (+)
CI01000310_01207513_01226750 CDC5L other upstream 935325 1207057 ~ 1227194 (+)
G439115 NA other upstream 1483538 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 1525177 648566 ~ 650159 (+)
G440505 NA other downstream 924378 3099417 ~ 3136328 (+)

Expression


Co-expression Network