G439896


Basic Information

Item Value
gene id G439896
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 2176291 ~ 2176580 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU504971
AAAGTTCTCAGTCAAGAGCAAAAAGTTATTTTGAAGAATGTGACCAAACAGTTGCTGGTCCACAGTGACTATGTTTTTCCTACCATGGAAGTCAATAGAGACCAGCAACTGTCCGGCTAACCCACATTCTCCAAAATATTTTATTTTGTGTTCTACACAAGAAAGAAATTAATACAGTTTTGAAACAACATTACAGTGAACTATCCCTTTAAGGACAAGCGACCGCATGGTTAATATTAGGCTGCTCTGTCACTTTAAGAACCTGCACGTATATCTAATATACAGCCACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU504971 True 290 lncRNA 0.38 1 2176291 2176580

Neighbor

gene id symbol gene type direction distance location
CI01000310_02164574_02165132 DDO coding upstream 10993 2164574 ~ 2165298 (+)
CI01000310_02115219_02147202 NA coding upstream 28983 2115219 ~ 2147308 (+)
CI01000310_02098738_02105250 FOXO3, FOXO3A coding upstream 70720 2098549 ~ 2105571 (+)
CI01000310_02087211_02095576 LACE1A, LACE1 coding upstream 80362 2087211 ~ 2095929 (+)
CI01000310_02042995_02059321 SMC6 coding upstream 116966 2041882 ~ 2059325 (+)
CI01000310_02482727_02513419 KCNK5, KCNK5A coding downstream 305489 2482069 ~ 2513779 (+)
CI01000310_02549824_02559417 SHPRH coding downstream 373244 2549824 ~ 2559491 (+)
CI01000310_02562834_02569144 NA coding downstream 385809 2562389 ~ 2569257 (+)
CI01000310_02572928_02575251 FBXO30A, FBXO30 coding downstream 396348 2572928 ~ 2575356 (+)
CI01000310_02639022_02649415 NA coding downstream 462442 2639022 ~ 2649666 (+)
G439894 NA non-coding upstream 1252 2174730 ~ 2175039 (+)
G439859 NA non-coding upstream 210303 1965670 ~ 1965988 (+)
G439826 NA non-coding upstream 217228 1957155 ~ 1959063 (+)
G439850 NA non-coding upstream 257483 1918468 ~ 1918808 (+)
G439924 NA non-coding downstream 72697 2249277 ~ 2292491 (+)
G439936 NA non-coding downstream 131435 2308015 ~ 2308268 (+)
G439935 NA non-coding downstream 132251 2308831 ~ 2309114 (+)
G439929 NA non-coding downstream 133114 2309694 ~ 2313067 (+)
G439933 NA non-coding downstream 160612 2337192 ~ 2338980 (+)
G439845 NA other upstream 263874 1911601 ~ 1912417 (+)
CI01000310_01508712_01511125 FAM167A other upstream 662950 1508341 ~ 1513341 (+)
CI01000310_01207513_01226750 CDC5L other upstream 936886 1207057 ~ 1227194 (+)
G439115 NA other upstream 1485099 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 1526738 648566 ~ 650159 (+)
G440505 NA other downstream 922837 3099417 ~ 3136328 (+)

Expression


Co-expression Network