G440401


Basic Information

Item Value
gene id G440401
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 2652439 ~ 2653394 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU505594
GGATAAACAGCATACGGAAGTAGTTTGAGAAAGCAGCAAGAACGGCCTTATGGGCTTTGAAAAGAACATCCCCAATGGCCACAGTACAGTCACAGAGGAAACCAAACTCTCTCTGAGCATTCAGACGCTTCAGAAGCACAAGACCATGATGTGCCAAGTCCATTTTTTCCCACCGTTCTTTCACGACAGAATTCTAATACCTTATTCAGTTTGGTTTGTTGGCTGAAAACGGAGGAAACTTCTTCACCGAAGCAGTACGAGTCTAGCCAGTCAGTGATCCGCTGCTGTTTTCCGGAGAATCACATGACATGCGCGCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU505594 True 318 lncRNA 0.47 2 2652439 2653394

Neighbor

gene id symbol gene type direction distance location
CI01000310_02639022_02649415 NA coding upstream 2773 2639022 ~ 2649666 (+)
CI01000310_02572928_02575251 FBXO30A, FBXO30 coding upstream 77083 2572928 ~ 2575356 (+)
CI01000310_02562834_02569144 NA coding upstream 83182 2562389 ~ 2569257 (+)
CI01000310_02549824_02559417 SHPRH coding upstream 92948 2549824 ~ 2559491 (+)
CI01000310_02482727_02513419 KCNK5, KCNK5A coding upstream 138660 2482069 ~ 2513779 (+)
CI01000310_02658724_02665972 CCDC170 coding downstream 5330 2658724 ~ 2666179 (+)
CI01000310_02789811_02790561 MYCT1B, MYCT1 coding downstream 136136 2789530 ~ 2791080 (+)
CI01000310_02793777_02805490 TULP4 coding downstream 140383 2793777 ~ 2807092 (+)
CI01000310_02810800_02814032 SLC18B1 coding downstream 156915 2810309 ~ 2814084 (+)
CI01000310_02823791_02825399 NA coding downstream 169243 2822637 ~ 2825761 (+)
G440420 NA non-coding upstream 16978 2635200 ~ 2635461 (+)
G440419 NA non-coding upstream 19240 2632896 ~ 2633199 (+)
G440383 NA non-coding upstream 108364 2543873 ~ 2544075 (+)
G440378 NA non-coding upstream 114669 2537412 ~ 2537770 (+)
G440423 NA non-coding downstream 4207 2657601 ~ 2657838 (+)
G440427 NA non-coding downstream 21906 2675300 ~ 2676499 (+)
G440472 NA non-coding downstream 173355 2826749 ~ 2827136 (+)
G440477 NA non-coding downstream 192529 2845923 ~ 2847548 (+)
G440483 NA non-coding downstream 201602 2854996 ~ 2855588 (+)
G439845 NA other upstream 740022 1911601 ~ 1912417 (+)
CI01000310_01508712_01511125 FAM167A other upstream 1139098 1508341 ~ 1513341 (+)
CI01000310_01207513_01226750 CDC5L other upstream 1413034 1207057 ~ 1227194 (+)
G439115 NA other upstream 1961247 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 2002886 648566 ~ 650159 (+)
G440505 NA other downstream 446023 3099417 ~ 3136328 (+)

Expression


Co-expression Network