G440427



Basic Information


Item Value
gene id G440427
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 2675300 ~ 2676499 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU505627
GCTGACTGCTGGTGATGTCTAGGGTCTTCTGTAGCTCTCTAATGTCTCGTGTGACCTCCTTCAGCAACAGCTTGAGACGGTTCCCGATCACATGCACCTTCTCTTTGGCTTCCAGACAGTCACTGCCTTCCGAGTGGACCAGCAGCTGAAGGGACATGTCCTGCAGGGACGCCACCTTCAGCTGCGTGTCCAGCAACTCTCGACGGATTTGCAGAAGCGTTTTGTGATGCTCCTGTAGCGTATCGCTGTCCTGAGTGTGGTCAATCGGGACAATCTCATTCCTCCTGCGATCGATATTCTCCAGCCATAGAAGGAGACCGTGACTCATCTCGTGGAAGTCCTGGCACTGCATGAGAGCGTGTTGGAGAGCATTCCTCCACTCATCCAGAGAGCTGCTCAGACGTTCCCAGCGGTTATTCATCTCCTTCAGCCGTCGCTGCAGGTCTCTTGCCTCCTCGCTGTCCGACTGCACAAACTCAGCGCTGCAGAGGTTAATGGACAGCACAATGGCCTTACGCTTATCCAGAGCCTTCTGCAGCTCCTGCGTGGAGTC

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU505627 True 553 lncRNA 0.55 3 2675300 2676499

Neighbor


gene id symbol gene type direction distance location
CI01000310_02658724_02665972 CCDC170 coding upstream 9121 2658724 ~ 2666179 (+)
CI01000310_02639022_02649415 NA coding upstream 25634 2639022 ~ 2649666 (+)
CI01000310_02572928_02575251 FBXO30A, FBXO30 coding upstream 99944 2572928 ~ 2575356 (+)
CI01000310_02562834_02569144 NA coding upstream 106043 2562389 ~ 2569257 (+)
CI01000310_02549824_02559417 SHPRH coding upstream 115809 2549824 ~ 2559491 (+)
CI01000310_02789811_02790561 MYCT1B, MYCT1 coding downstream 113031 2789530 ~ 2791080 (+)
CI01000310_02793777_02805490 TULP4 coding downstream 117278 2793777 ~ 2807092 (+)
CI01000310_02810800_02814032 SLC18B1 coding downstream 133810 2810309 ~ 2814084 (+)
CI01000310_02823791_02825399 NA coding downstream 146138 2822637 ~ 2825761 (+)
CI01000310_02861303_02864477 NA coding downstream 184076 2860575 ~ 2865057 (+)
G440423 NA non-coding upstream 17462 2657601 ~ 2657838 (+)
G440401 NA non-coding upstream 21906 2652439 ~ 2653394 (+)
G440420 NA non-coding upstream 39839 2635200 ~ 2635461 (+)
G440419 NA non-coding upstream 42101 2632896 ~ 2633199 (+)
G440472 NA non-coding downstream 150250 2826749 ~ 2827136 (+)
G440477 NA non-coding downstream 169424 2845923 ~ 2847548 (+)
G440483 NA non-coding downstream 178497 2854996 ~ 2855588 (+)
G440623 NA non-coding downstream 373011 3049510 ~ 3049788 (+)
G440533 NA non-coding downstream 419492 3095991 ~ 3098488 (+)
G439845 NA other upstream 762883 1911601 ~ 1912417 (+)
CI01000310_01508712_01511125 FAM167A other upstream 1161959 1508341 ~ 1513341 (+)
CI01000310_01207513_01226750 CDC5L other upstream 1435895 1207057 ~ 1227194 (+)
G439115 NA other upstream 1984108 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 2025747 648566 ~ 650159 (+)
G440505 NA other downstream 422918 3099417 ~ 3136328 (+)

Expression



Co-expression Network