G440623


Basic Information

Item Value
gene id G440623
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 3049510 ~ 3049788 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU505860
CTGACCCAGTCGTCTAGCCATCACAATTTGGCCCTTGTCAAACTTACTCAAATCCTTACGCTTGCCCATTTTTCCTGCTTCTAACACATCAATTTTGAGGACAAAATGTTTGCTTCCTGCCTAATATATCCCACCAACTAACAGGTGCCGTGATGAAGAGATAATCAGTGTTATTCACTTCACCTGTCAGTGCTCATAATGTTATGTCTGATCGATGTATCAGCTTCTCAAACAAGTAAAAATGTAGGGTGGGACTTGATTTTGTCCATGATGATTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU505860 True 279 lncRNA 0.41 1 3049510 3049788

Neighbor

gene id symbol gene type direction distance location
CI01000310_02876181_02939106 CDC42BPA coding upstream 110404 2876181 ~ 2939106 (+)
CI01000310_02861303_02864477 NA coding upstream 184453 2860575 ~ 2865057 (+)
CI01000310_02823791_02825399 NA coding upstream 223749 2822637 ~ 2825761 (+)
CI01000310_02810800_02814032 SLC18B1 coding upstream 235426 2810309 ~ 2814084 (+)
CI01000310_02793777_02805490 TULP4 coding upstream 242418 2793777 ~ 2807092 (+)
CI01000310_03054431_03066827 EDRF1 coding downstream 4643 3054431 ~ 3067384 (+)
CI01000310_03069663_03095555 TONSL coding downstream 19747 3069535 ~ 3095888 (+)
CI01000310_03165171_03170431 PSMC1B, PSMC1, PSMC1A, PSMC1.L coding downstream 115149 3164937 ~ 3170431 (+)
CI01000310_03190691_03191339 NA coding downstream 140209 3189997 ~ 3191430 (+)
CI01000310_03211078_03340983 AKAP6 coding downstream 161290 3211078 ~ 3341448 (+)
G440483 NA non-coding upstream 193922 2854996 ~ 2855588 (+)
G440477 NA non-coding upstream 201962 2845923 ~ 2847548 (+)
G440472 NA non-coding upstream 222374 2826749 ~ 2827136 (+)
G440427 NA non-coding upstream 373011 2675300 ~ 2676499 (+)
G440423 NA non-coding upstream 391672 2657601 ~ 2657838 (+)
G440533 NA non-coding downstream 46203 3095991 ~ 3098488 (+)
G440546 NA non-coding downstream 96446 3146234 ~ 3177391 (+)
G440659 NA non-coding downstream 142899 3192687 ~ 3192887 (+)
G440672 NA non-coding downstream 307036 3356824 ~ 3357153 (+)
G440566 NA non-coding downstream 315945 3365733 ~ 3369343 (+)
G439845 NA other upstream 1137093 1911601 ~ 1912417 (+)
CI01000310_01508712_01511125 FAM167A other upstream 1536169 1508341 ~ 1513341 (+)
CI01000310_01207513_01226750 CDC5L other upstream 1810105 1207057 ~ 1227194 (+)
G439115 NA other upstream 2358318 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 2399957 648566 ~ 650159 (+)
G440505 NA other downstream 49629 3099417 ~ 3136328 (+)

Expression


Co-expression Network