XLOC_000013 (lamp1a)


Basic Information

Item Value
gene id XLOC_000013
gene name lamp1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 176583 ~ 182258 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000028
cagagtgtgtctgtgtttgcgcTGCCGGCGTCTGCATCGGTGTCGGAGCGGAGCTCGTGCGGATCCGCTGCTGTTCCTCCAGAGCTGGCGCTGGTGtttggagacacacacacacacacactctctctgctgTTCTCCAGAGACCAGCGGCTCTACAGGGTCTCCAACATCAGCCTGCAGTACAACCTGAGCGATGGAGACATCTTCCCACAATCCTCTAgtgcaggtaaacacacacacacacacacacacacacacacgcacgcacctTCCCACAGTCCTCTAgtgcaggtaaacacacacaaacacatgcacacgcatACACAGACACTTTCCCACAATCCTCTAGtgcaggtcacacacacactctgaaatacactcatatgtgtgtgtgtgttgtgtgtgtgtgtgtgatagagagtgTGTGCAGTGCAGATCAGCCGTCTACAACTGTAGCTCCGCCCCCCAGCACCACCACATCTCCGCCCCCCATCCCCCCAGTGCCAGAGCGTGGAAACTACAGCGTTACAGACGGAAACGGCAccgtgtgtgtgctggcgctcatgggTCTGCAGCTCAACATCACACACACCACAACACAAAACCAGAGCGTGTCTGAGCTCATGAACCTGCAGCCCAATCAGACCACAGTCTCGGGGTCATGCGGGGTCACAGAATCCAGCCTCAGACTATCAGACGAGACGACCAACCTGACCTTCAGCTTCACCATGGtcagactgagtgtcaaacggaacttcctatatgctacacatgctagcaTTGTGTTTGAGGCAGGGAACACCTCTCTGTCTGCGCTGCAGTGCAGTGTGGGTCGCTCGTATGTGTGCAGCGCTCAGCAGATGCTCTCAGTGACGCCGGTCTTCTCCATCAACACCTTCAGACTGCAACTGCAGCCCTTCAACATCACCGCCAACCGCTTCTccacagcggaGGAGTGTCGTGTGGACCAGGAGAACATGCTGATCCCCATCATCGTGGGTGCGGCGCTGGCGGGGCTGGTGCTGATCGTGCTCGTGGCGTATCTGATCGGCAGGAAGAGAACACACGCCGGGTACCAGACCATCTGA
>TCONS_00000029
agtgtgtctgtgtttgcgcTGCCGGCGTCTGCATCGGTGTCGGAGCGGAGCTCGTGCGGATCCGCTGCTGTTCCTCCAGAGCTGGCGCTGGTGtttggagacacacacacacacacactctctctgctgTTCTCCAGAGACCAGCGGCTCTACAGGGTCTCCAACATCAGCCTGCAGTACAACCTGAGCGATGGAGACATCTTCCCACAATCCTCTAgtgcaggtaaacacacacacacacacacacacacacacacgcacgcacctTCCCACAACACTTTCCCACAATCCTCTAGtgcaggtcacacacacactctgaaaATCTGCTTTAAATCGGTGTGTGCTGTATTAaactcaagtgtgtgtgtgtgtgtgatagagagtgTGTGCAGTGCAGATCAGCCGTCTACAACTGTAGCTCCGCCCCCCAGCACCACCACATCTCCGCCCCCCATCCCCCCAGTGCCAGAGCGTGGAAACTACAGCGTTACAGACGGAAACGGCAccgtgtgtgtgctggcgctcatgggTCTGCAGCTCAACATCACACACACCACAACACAAAACCAGAGCGTGTCTGAGCTCATGAACCTGCAGCCCAATCAGACCACAGTCTCGGGGTCATGCGGGGTCACAGAATCCAGCCTCAGACTATCAGACGAGACGACCAACCTGACCTTCAGCTTCACCATGcaaccaatcatcaacagctatatctcagcatcggaacatcgtagagacttgtggccagtaagtgtgtTTGTGTTTGAGGCAGGGAACACCTCTCTGTCTGCGCTGCAGTGCAGTGTGGGTCGCTCGTATGTGTGCAGCGCTCAGCAGATGCTCTCAGTGACGCCGGTCTTCTCCATCAACACCTTCAGACTGCAACTGCAGCCCTTCAACATCACCGCCAACCGCTTCTccacagcggaGGAGTGTCGTGTGGACCAGGAGAACATGCTGATCCCCATCATCGTGGGTGCGGCGCTGGCGGGGCTGGTGCTGATCGTGCTCGTGGCGTATCTGATCGGCAGGAAGAGAACACACGCCGGGTACCAGACCATCTGA

Function

symbol description
lamp1a Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Orthologous to human LAMP1 (lysosomal associated membrane protein 1).

GO:

id name namespace
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3708 Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Orthologous to human LAMP1 (lysosomal associated membrane protein 1).

Ensembl:

ensembl_id ENSDARG00000100181

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000028 False 1088 mRNA 0.56 6 176583 182258
TCONS_00000029 True 1068 mRNA 0.56 8 176586 182258

Neighbor

gene id symbol gene type direction distance location
XLOC_000012 cul4a coding upstream 9185 157793 ~ 167398 (+)
XLOC_000011 NA coding upstream 19301 156792 ~ 157282 (+)
XLOC_000010 prozb coding upstream 24585 144284 ~ 151998 (+)
XLOC_000009 f10 coding upstream 34114 135903 ~ 142469 (+)
XLOC_000008 f7i coding upstream 42504 127250 ~ 134079 (+)
XLOC_000014 tmco3 coding downstream 36266 218524 ~ 225137 (+)
XLOC_000015 tfdp1b coding downstream 44983 227241 ~ 243798 (+)
XLOC_000016 grk1a coding downstream 62818 245076 ~ 258138 (+)
XLOC_000017 cenpe coding downstream 77781 260039 ~ 296057 (+)
XLOC_000018 NA coding downstream 173223 355481 ~ 358562 (+)
XLOC_000024 dre-mir-155 non-coding downstream 394186 576444 ~ 576521 (+)
XLOC_000026 NA non-coding downstream 612718 794976 ~ 911551 (+)
XLOC_000028 NA non-coding downstream 833554 1015812 ~ 1033638 (+)
XLOC_000029 CR450787.2 non-coding downstream 1036433 1218691 ~ 1218805 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location