CI01000319_03139476_03152542 (NEDD9)


Basic Information

Item Value
gene id CI01000319_03139476_03152542
gene name NEDD9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 3139373 ~ 3152570 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000319_03139476_03152542.mRNA
GTTTAAAAGTAGAGGTTCTGCTTTTGACATTAAGAGTATAGAGAGCTACTAGTCTCAGATATCAGGAGTGTTGAAGGTTAAGCTTACAGTCTGTCCACCTCAAATGATCTTGAGATGGACGATCAACACATGCAGTATGGCTTTATGGAAACAGGGTTGTGTTGCTTTGATTGAGGTTTGCCTGACCATTTTGTTTGCTGGCGTTCAGAATAACGGCACACCTTGTTTGTTGTTTGATGGTTGGCATACAGTTGGCCACTCTTGTAAGGGTGAGGTGGTGACCCCAGTACGAGTAGGACAAACATATGCCTACAGTCCTGCTTCAGATTCATCTCATGACCTCTATGATGTTCCTCCAGTTCGTCCACAGGGGGTGTATGATATTCCTCCGAGCATGCAAACCGGACAGCACAGCATTCCCAGATCCCAGGGCGTCTACGACACACCTCCGTCACAAGACCTGCGATCAAAAGGACTGTATGACATACCGCCATCATCGCAAGGGGTATACTCCACGCCACCTTGTCGGAATAACATTGCACAAGATGAAGGGAATTACGACTTTCCACAGCCTTCAAAGCACAAGCAAGAAGGTGTATATGACGTTCCACCTACATCGATCTCTAAAGCTTCCTCATGCTCCAACTACGACTTCCCGCCCAGCTCTGAGCCGGTGTCCCGAAAGGGCATGAACAACAGCGTCGGCATCTACGACGTTCCCCCCAGTCAACCCGCCACAGGTGGATCTGGGGACCTGTACGATATTCCACGTGGGATGCCTCAGAACCGACACGCTTCCTCTGAGAAGGACAGGAATAAGTCCATTTACGATATCCCACCGGGAGACACTCGGTTGCTTGGTGATGTGACCGAAGGCGTAAACCGCTTGTCGTTTTCTAGCACGGGAAGCACTCGCAGCAGCATGTCGACTTCCTCTTCTTCCGCTGGATCTCCCGCCGAGAGTCGTCTGGCATTGGATCTAGACTCTGCGTTTCAGAGGTTGGGTCGCCTCCAGCAAGGTCTGGAGTCCTCTGTTTGCTCGCTGCAAACTCTTGCGGCATCGCCTCACTGGCGGACATACAGCTTCATGGAGCGCCACGCCAATGAGGTCCGTGTTTTATTGGAGCGCGTCAAGAGTTCGCTCACAGAATTTCTCGTATTTGGTCGTGGAGCGGCAGCGAACGCCACCACGCTGTCCGATCAAGGACTGCACTCTAAGTTGCGACGCCAGTTGCAGCGTCTGGAAGATTCCCATCAGATTCTTCAACAAACACACCAGACTTTAGAAAACAATAACTGGCTGCTTAATATCCTAGCAATTGGCAACAAGCATCAGAGCAAGAGTGACGAACTAGAACGTTTTGTAATGGTGTCACGGACAGTGCCTGATGATGCCAAGCAGTTGGCTTCAACAATAGGTGGCAGCGCAGAGATGCTCTTCCGAAGGGCACCAATAGAGGGCATCGTTCACCCCTTTACCTGTACCCCAACGGAGGACGACAGCTACGGAGGCCAGACCAAACCTTTCCCCGTATCACATGACAAAGCAAACATGAACAGCGAGAAGTGCGTTAAAAGCTGGATGGAGGATTATGACTATGTCCATCTGCAGGGAAAAGATGAATTTGAACGACAACAGAAGGAACTCTTAGAGAAGGAGAACATCACCAAACAGAGCAAAGTCCAACTCGCCCAAGAACAGCTGAACCAGTTTAAACAGCTCGAACAGGAAGTGATCAAACCTGTAGAGAATGACATCACCAAGTGGATCTCCCACCAACATTCAACAGGCTCCTCCTCAGACTCCTCCTCTAATTTCTCCACAGGAGGCGGAGCTCCATTGGGTTTACGCGATCGGCAACTGTTGGGCTTCTATGCGGACCAATGCGAACAGCACTTTGTGACTTTGCTGAATGCTGTAGATGCTTTTTTCGGCTGCGTGAAGGCCGGGCAACCTCCTCGAATCTTCGTTGCACATGGCAAATTTGTCATTCTCAGCGCCCACAAGCTCGTGTTTATCGGTGACACTCTGTCAAGACAGGCCTCGGCGGCAGAAGTGGCAAATCGCGTAATGAACTTAAGCAACGTGCTGTGCGAGATGCTAAAGACAGTCGTGGGTGCCACAAAAACGGCAGCCCTTCACTATCCCAACACAGCTGCTGTACAGGAAATGGTAGATCGCGTGACGGACCTCTCGCACTTGGCACAACAATTTAAAGTGCAGCTCTCGCAGATGGCAGGATTGTGATGTCATCAATGATGTCAACAATATCTGA

Function

symbol description
nedd9 Predicted to be involved in actin filament reorganization; cell migration; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within cell adhesion. Predicted to be active in cytoplasm. Predicted to colocalize with plasma membrane. Orthologous to human NEDD9 (neural precursor cell expressed, developmentally down-regulated 9).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K16832 NEDD9, HEF1, CASL; enhancer of filamentation 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000319_03139476_03152542.mRNA True 2276 mRNA 0.50 6 3139373 3152570

Neighbor

gene id symbol gene type direction distance location
CI01000319_03125942_03128108 NA coding upstream 10845 3125866 ~ 3128528 (+)
CI01000319_03067481_03071297 NA coding upstream 68026 3066768 ~ 3071477 (+)
CI01000319_03020934_03021218 NA coding upstream 117810 3020766 ~ 3021563 (+)
CI01000319_03011414_03016792 NA coding upstream 122178 3009565 ~ 3017195 (+)
CI01000319_02979402_02979695 NA coding upstream 159555 2979186 ~ 2979818 (+)
CI01000319_03238023_03240147 NA coding downstream 85453 3238023 ~ 3240283 (+)
CI01000319_03283470_03293866 OSCP1A coding downstream 130861 3283431 ~ 3293926 (+)
CI01000319_03295425_03299640 LSM10 coding downstream 142855 3295425 ~ 3300676 (+)
CI01000319_03307678_03308097 NA coding downstream 153914 3306484 ~ 3308463 (+)
CI01000319_03389749_03391750 NA coding downstream 237179 3389749 ~ 3391991 (+)
G451653 NA non-coding upstream 59606 3079555 ~ 3079767 (+)
G451652 NA non-coding upstream 60445 3078726 ~ 3078928 (+)
G451651 NA non-coding upstream 60816 3078271 ~ 3078557 (+)
G451630 NA non-coding upstream 86826 3050912 ~ 3052547 (+)
G451681 NA non-coding downstream 18112 3170682 ~ 3218583 (+)
G451682 NA non-coding downstream 19590 3172160 ~ 3259168 (+)
G451683 NA non-coding downstream 28326 3180896 ~ 3212205 (+)
G451690 NA non-coding downstream 37046 3189616 ~ 3206366 (+)
G451667 NA non-coding downstream 58619 3211189 ~ 3311940 (+)
G451500 NA other upstream 300424 2838086 ~ 2838949 (+)
G451485 NA other upstream 394850 2742741 ~ 2744523 (+)
G451357 NA other upstream 648080 2467916 ~ 2491293 (+)
G451367 NA other upstream 656952 2481064 ~ 2482421 (+)
CI01000319_02344195_02381474 NA other upstream 760322 2344195 ~ 2381474 (+)
G451677 NA other downstream 63770 3216340 ~ 3229331 (+)
G451662 NA other downstream 180711 3333281 ~ 3334824 (+)
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 other downstream 249880 3402112 ~ 3448275 (+)
G452043 NA other downstream 346756 3500279 ~ 3500512 (+)
CI01000319_04515268_04534770 NA other downstream 1379049 4515268 ~ 4536025 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013766 nedd9 coding NC_007130.7 CM002903.2 3653976 ~ 3707794 (+)