CI01000319_03238023_03240147


Basic Information

Item Value
gene id CI01000319_03238023_03240147
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 3238023 ~ 3240283 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000319_03238023_03240147.mRNA
ATGACATCAGCCAATCCTCCCGAACGGCGCAGCAGCAAGAATGAACCTCCTTTAATGGCATCACATCATGATGCCATCTTAATGAATCCAGGTCCTCCAGCGCTTTACCGTCTGAACACTGAAAGAAAATATATTAATGGAAATGATAGAAAGTTGAGACAGTGGACATATGGACGAAGAGACGGAAAGAAGCAGAACAAAGTCATACTGATGACATCTGAGATCACTATTTATGAGGTGGTTGTTGAAGAGAAACCAACATCTCTGACCATCATTGACACTCCTGGATATGCAAACACTGAAGGATACGAGAAAGACAGAGAGATTTCTGATTATCTGTGCAGATTATTTTCAAATGAGGATGGGATTCATTATATTGATGCAGTGTGTTTTGTGATGAAGGCGGCTCAGAATCGTTTCTCTGCAAAAGAGCATTATATATTTCACTCAGTTCTGTCTCTGTTTGGTAGAGATATAGAAAACAACATAGTGTTTCTACTCACACATTCAGATGGCGGTCGTCCAACAGATGCTCTCAATGCAATTAACACCGTAGAAATACCCTTCAGAAGAGATAAAGACAATGAACCCGTCCACTTCTTATTCAACAACAGACAGAAAGAGGAAAGAGATGAACAGTATGAGCACCTCGACAGATCATCATGGGAAATGGGAGAGAGAAGCATGAATGAGTTCTTCACACTCCTGGAAGAAATGAACAGAAAAAGTATTCAGATGACATTAGATGTTCTGAATGAGCAAAGGCGACTTGGGGCCTGTGTCTCTAATCTCAAGCAGCGAATCTCTGAGAAGGAGTTAAAAAATGAACACCTGAATAAGATTCAGGAAGCCATCAGACAGAACAAAGATAAAATTGAGAAATGTGAAAACTCAGAGTTCACAGTCAAGAGAAGGTTCAAAGAAAAAGTCCTCATTGAAAATACATCACGTTGGAGCACAGACGCAACCTGCTGCTCTGTCTGTGAGGAAAACTGTCATGAATGGGGCTGCTGGTTGGAGAAAGATGCTTCATGTTGTTCAGTCATGGAAAACAAACACTGCACTATGTGTACAGGAAAGTGTCATTACAGCAAGCATGTCAAAGAGAACAAAAAATATGTGATAAAGACAAAGGAAGTTAAAATGACATTTCATGATCTCAAACAGGAGTATGAACGCACTGGTGAAAAGACTGAAACCACCTTTGACAAAGAGAAATATGAAAATACTAAAAAGAAACATGAAAGCAACATGCAAGAGTATGAGAATAAAACAAAAATAGAAAAAAAATTGATCAGTGAACTGGAGAAGATTGAGAATGAAAAGTCCAAACTGCTTGCTGAAGCTTATATCAGCATCATGATTCTGTCCAAGATCGCATTAAAAGCAGACAGCGCTTTCACTCTTCAACATCTGGATTTTTTGATTCCCAGACTAAAAGAGGAGGGAGAAGATGAATGGATTAAGAACCTGGATGATCTGAGGAAAGCTGGAGAAGAGCAGAGAAACAAGGGTGCTTTTTGTCATGTGATGGATTTTGGCAGACAAAAATGGAAACAAATCGTCAGTCGTGGTAAAAATGAATAAATGCATAAAACTGGAACATTCAAGATGGAACAGATTCTGCTCCATCATTGAAAAAAATTCACTCAGAACAAGGGTCTCTGTTATAAAATTACTGAACACATGAAATCTCTTATTTTATCTTTCAATATGTGTAAAA

Function

NR:

description
LOC554469 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000319_03238023_03240147.mRNA True 1723 mRNA 0.39 3 3238023 3240283

Neighbor

gene id symbol gene type direction distance location
CI01000319_03139476_03152542 NEDD9 coding upstream 85453 3139373 ~ 3152570 (+)
CI01000319_03125942_03128108 NA coding upstream 109495 3125866 ~ 3128528 (+)
CI01000319_03067481_03071297 NA coding upstream 166676 3066768 ~ 3071477 (+)
CI01000319_03020934_03021218 NA coding upstream 216460 3020766 ~ 3021563 (+)
CI01000319_03011414_03016792 NA coding upstream 220828 3009565 ~ 3017195 (+)
CI01000319_03283470_03293866 OSCP1A coding downstream 43148 3283431 ~ 3293926 (+)
CI01000319_03295425_03299640 LSM10 coding downstream 55142 3295425 ~ 3300676 (+)
CI01000319_03307678_03308097 NA coding downstream 66201 3306484 ~ 3308463 (+)
CI01000319_03389749_03391750 NA coding downstream 149466 3389749 ~ 3391991 (+)
CI01000319_03394244_03396334 BTR26, BTR18, BTY, BTR25, BTR22 coding downstream 153961 3394244 ~ 3396614 (+)
G451681 NA non-coding upstream 19440 3170682 ~ 3218583 (+)
G451683 NA non-coding upstream 25818 3180896 ~ 3212205 (+)
G451690 NA non-coding upstream 31657 3189616 ~ 3206366 (+)
G451655 NA non-coding upstream 75655 3114527 ~ 3162368 (+)
G451653 NA non-coding upstream 158256 3079555 ~ 3079767 (+)
G451663 NA non-coding downstream 54368 3294651 ~ 3329012 (+)
G451666 NA non-coding downstream 110456 3350739 ~ 3375767 (+)
G451741 NA non-coding downstream 136146 3376429 ~ 3376706 (+)
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 non-coding downstream 163914 3402112 ~ 3448275 (+)
G451677 NA other upstream 8692 3216340 ~ 3229331 (+)
G451500 NA other upstream 399074 2838086 ~ 2838949 (+)
G451485 NA other upstream 493500 2742741 ~ 2744523 (+)
G451357 NA other upstream 746730 2467916 ~ 2491293 (+)
G451367 NA other upstream 755602 2481064 ~ 2482421 (+)
G451662 NA other downstream 92998 3333281 ~ 3334824 (+)
G452043 NA other downstream 259043 3500279 ~ 3500512 (+)
CI01000319_04515268_04534770 NA other downstream 1291336 4515268 ~ 4536025 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other downstream 1546757 4787040 ~ 4790529 (+)

Expression


Co-expression Network