CI01000319_03402932_03447997 (BTR26, BTR25, BTR24, BTY, BTR22, BTR18)


Basic Information

Item Value
gene id CI01000319_03402932_03447997
gene name BTR26, BTR25, BTR24, BTY, BTR22, BTR18
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 3402112 ~ 3448275 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

Function

symbol description
bty Predicted to enable ubiquitin-protein transferase activity and zinc ion binding activity. Acts upstream of or within erythrocyte differentiation. Is expressed in several structures, including DEL; deep blastomere; hematopoietic system; tail bud; and yolk syncytial layer.
btr24 Predicted to enable zinc ion binding activity. Orthologous to human TRIM60 (tripartite motif containing 60).
btr26 Predicted to enable ubiquitin-protein transferase activity and zinc ion binding activity. Predicted to act upstream of or within protein ubiquitination.
btr22 Predicted to enable ubiquitin-protein transferase activity and zinc ion binding activity. Predicted to act upstream of or within protein ubiquitination. Orthologous to human TRIM17 (tripartite motif containing 17); TRIM38 (tripartite motif containing 38); and TRIM7 (tripartite motif containing 7).
btr18 Predicted to enable zinc ion binding activity.
btr25 Predicted to enable zinc ion binding activity. Orthologous to several human genes including TRIM21 (tripartite motif containing 21); TRIM58 (tripartite motif containing 58); and TRIM68 (tripartite motif containing 68).

GO:

id name namespace
GO:0030218 erythrocyte differentiation biological_process

KEGG:

id description
K12015 TRIM39; tripartite motif-containing protein 39

RNA

RNA id representative length rna type GC content exon number start site end site

Neighbor

gene id symbol gene type direction distance location
CI01000319_03394244_03396334 BTR26, BTR18, BTY, BTR25, BTR22 coding upstream 5622 3394244 ~ 3396614 (+)
CI01000319_03389749_03391750 NA coding upstream 10121 3389749 ~ 3391991 (+)
CI01000319_03307678_03308097 NA coding upstream 93649 3306484 ~ 3308463 (+)
CI01000319_03295425_03299640 LSM10 coding upstream 101436 3295425 ~ 3300676 (+)
CI01000319_03283470_03293866 OSCP1A coding upstream 108186 3283431 ~ 3293926 (+)
CI01000319_03483504_03487172 NA coding downstream 32708 3480983 ~ 3488654 (+)
CI01000319_03500024_03502600 NA coding downstream 50997 3499272 ~ 3502830 (+)
CI01000319_03529404_03549529 NA coding downstream 79805 3528080 ~ 3549725 (+)
CI01000319_03582485_03652347 TRAPPC9 coding downstream 134210 3582485 ~ 3652447 (+)
CI01000319_03786208_03790365 NA coding downstream 337933 3786208 ~ 3791000 (+)
G451741 NA non-coding upstream 25406 3376429 ~ 3376706 (+)
G451666 NA non-coding upstream 26345 3350739 ~ 3375767 (+)
G451663 NA non-coding upstream 73100 3294651 ~ 3329012 (+)
G451667 NA non-coding upstream 90172 3211189 ~ 3311940 (+)
G452051 NA non-coding downstream 15221 3463496 ~ 3464355 (+)
G452053 NA non-coding downstream 57469 3505744 ~ 3506186 (+)
G452045 NA non-coding downstream 88275 3536550 ~ 3539369 (+)
G452107 NA non-coding downstream 229077 3677352 ~ 3678658 (+)
G451662 NA other upstream 67288 3333281 ~ 3334824 (+)
G451677 NA other upstream 172781 3216340 ~ 3229331 (+)
G451500 NA other upstream 563163 2838086 ~ 2838949 (+)
G451485 NA other upstream 657589 2742741 ~ 2744523 (+)
G451367 NA other upstream 919691 2481064 ~ 2482421 (+)
G452043 NA other downstream 51051 3500279 ~ 3500512 (+)
CI01000319_04515268_04534770 NA other downstream 1083344 4515268 ~ 4536025 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other downstream 1338765 4787040 ~ 4790529 (+)
G452541 NA other downstream 1891247 5336085 ~ 5353023 (+)
G452545 NA other downstream 1905419 5353694 ~ 5356035 (+)
G451357 NA other upstream 911157 2467916 ~ 2491293 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location