CI01000319_03483504_03487172


Basic Information

Item Value
gene id CI01000319_03483504_03487172
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 3480983 ~ 3488654 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000319_03483504_03487172.mRNA
CTATAAAAACACTCTGGGCAATTCTCTGCCAGAGTGAAATCACCCAAAAAGAGGCGGTACTCCACAGAATGTGACTTGATTGCACTGATTGGACTGTATATCCAGAGGCAGAACAAACAGTCTGTAGTGACAGCTAGCGTAACACTGTGGTTGAATGTAATTGAAAAAAATCAGTCCCTTTCGCACTTTGGTGGTTTGTTGCCCTATTGCCCTAACAAAGAAACTGCCCCTGGTGTGTTTGGCCCCCTTCTCACTATAGAGAGTCTTTCTGCTGGGGCCTCTGCTCATTTGAGCCCTATTTAGATTGCTTTCAAGTGCGGCCTTCTTTAGCCAACTTGATGAGTGGTCTATTTGTTGAGCATGTTTGGCCTCCTCTCATTATTGAGAGTTCCTCTACACTGGCTGCCGCTCACATGGGTTCAATTTAGACAGGGATATCAAGTGTTCGGCCTTCTGCTAGGCCGCCTTGATAAACTGTTTTAAAATAGAGTGAGTTTGGCCCTTTTTAAAAAAAAAAAAAAGAAAAAAAGAAAGAAAGAAGCAGCTTTTTTTTTTTTTTTTGCATGGTTAATTGTCATAAGGTAGTTCATCAGTCAAATTCATTTAAAAATGTATATTCAGTAGGTATGAAATAAGATCAGTAAGAGAAAAACACTGTTACCGAGAAGACACGCACTGGACTGCAGCAGGTTAGTTGGGAAATAAATTTATTTTTTATTCAGAATGCGCATTTGGATGGGAACATTTCAGCAGGTTGAGATGTAAGCATCCTCAGTTTTGAAAGGCCTACTACACATGAAGGTACTCCCCGGGAGTAATATGTAACTCCCACATATTATTTTAAAAGGACTTTCATCCCATCATATTAGTCTCACCCACGCTTTCCTCAATTGTTGTTTTTTTTTGGGAAATCCTGAAATCTGAGGTAAGGGTGTTGTTGTTTAGATTTAGAGCAGCCAGATCGCTGCATTAACACTGGCGAGAGGATTTAGCCATTAGTTTTGATTGTGTTGCGATGGGACCAGATGTAGTGATACACTGCTTCACTTACCGGGTACAGGAAGTGTGATAAAGGCCTAATGAGACACAGCTGAAGACAATAGCGTACCTCAGGGATGACGTGTTTTTGTAGGCCAACCTGGAAGTTAGCGGCGCATGGGTTCCCTCGATCGAAATGTTTCCCATAGACAAAAAATAAGCTCTGTGTTTAACAAAGGGTTATGACACTTACACGTTTTGTCTATCAAGATAATCTTTACAAGTTAACACAACATTTATACATTTTGAAGCCTAAATAAAGTCGTCAGATATAAAAAGCTAACAGTAGGCTATAAACGGACTACAGCATATCATGGTCGCGGATCAACGTCACCACCACCAAGCTTCCTCACACGAAAAAAACAACTTTATTTAAAAACATGCTCGCTGATTATGATCTGCGCTGAGTATGAATACTTATCCACTTTTTCATGAGAAATGCTGTCCAAATGTCCTGTTTGTCATGATGACGTCTGAAGACCCCGCCAAAGGAAATAGTCCCTTTTAGCAATTTGTTAGCAACCTCCGTTTTTAAGACACAATAGCGGTTTATAAAATCACAAGCAGGTTATAACTGGTGTGTTTTATGTCATAGATCAAAACGTGAAAATATTTAGAGGCTTTGTTAATCACAGACCTTATTTCAGGCGATTTAGCAAAAACCCATTCAAAAAAAAACATAGACTGTAGGCCGATGGAACCGGAAGTCCTAAAATGCTAACTTGCTTTGTTTTGCCTACGAAAACACGTCATCCCTGAGGTACTCTATCATGGATGATGAGACCTTGAATGAGTGGCAATAGTCTGGGGCAGTGTGCCCTCTGGTGGCTATCAAGGGCACTCAAGCTGGTGATCGTGACAAAAGATATTGTTTAATGGCCATATTCTGTTGTTTGAAATTCTTAAAGTTAATGACTAAATGAATGTTAATTCTGCAGTTGTGAGAGATGTAATAAGAAATGGCTTCTGCCTACCCCTTTTAAGTCACTGTGGGTTGTTTTTGTTAAATTATTTAGAATGATGACTTATGCATATATACTGTTTTAGTTTTTGAGTTTTACGAAACAAAATAAACTGTGTAAATATGAATAGAAGCCATAGCCTACATATAACTTTGGTTTACAAAGAGCCCATTTTTTAATGTGCATATGTATTTTTCCCAATAAAATAATTTCCCAATAAAATCTTTCCAAGACATAGTTGACATAAAAAGAAGCAGATTAAAGGTATGATCTGATGCTCTGCCAGACTACTATTTCACACCATTACTTTCTGTTGGTTTGGAGGATTTTTCTATCCAAACTGCCCCGTCATTTCAGAAAATAGTACAACGGCGATTGTGTCGACCATAAACGCCTCTGAAGTGCGGACGGTCGCGGTGCAGTGCAGGTGAAAGTATGAACAAGGCTTAACACTCCCCATGCTGAAGGATTTCTCCTCTTTCCTGCTGTAGTTTTACTCATACCTGTGCAGCTCTAGAAACATGAGGAACTGGTCTAAGATCAGTGTGAAGACTGATGAGAGTCTGGAGACTGCGAGGAGATCTCTGACTCGACTGAAGGACACTCTAGATGAGAAACTCACTCCAACTGATCTGAAGAGGATGCAGCAGTATGCAGTGGATGTGACTCTGGATCCTGATACAGCTAATCCTGAACTCATCCTGTCTGATGATGGAAAACGAGTGAGAGATGGAGACATAGAGCAGAAACTCCCAGACAAACCAAAGAGCTTTAATCCATGTCCATGTGTCCTGGGAAAGGAGGGATTCTCCTCAGGGAGATTTTATTTTGAGGTGCAGGTGAAGGAAAAGACAGAATGGGATTTAGGAGTGGCCAGAGAATCCAGTAACAGGAAGGGTTTGATCTCACTGAGACCCAGTAATGGATACTGGACTGTGATTCTGAGGAATGGGAATAAATATGAAGCCGGTGCTGGTCCTCCTGTCTCTCTCTCTCTGAGCGTGAAGCTGCAGCGGGTCGGTGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGGAGTCCAGATCTCATATCTACTCTTTCACTGGTCAGTCTTTCACTGACAAACTCTATCCATATTTTAGCCCAGGCCCTATTAATGGATGTAAAAACTCAACTCCACTGATCATCACACCTGTCAAATACAATGAATGAATTTACATACCTAATATGAAATACTAGATGAAAATAATGATTTTAATTAGGGATGTGCCCGAAGCCGAATGCCATGTTCGGAAAGGAAATGACGTACTACGGAGCCTCTTAAGGGAATAAATATGAGATAGGAGTAAAAAATATATTTCAATGCTTTCTCTGGCAATTATAGGCTATATTTGGGTAATTATAATGTATATAATTTGCCAGCATCAGGGAGCTGCTATTAATTTGCAGAGTATTGAAATCACGTTTGAATGCATGCTGCAATTTACTTTCACTTTAGAGATTCGCCATCTCACGTACTGTGTGTATTCTAGTGAGCGTCAGTACTACTTACCACACATTTCACAAGATTAGATATTTGTCAGTGGCACTCAGGAACTGCAAACCATACACCATTGTCCTATCAGCCATCTCTAGTTATGTGGTAAGTGAAATCTGATGTTCTATAAGGTAACAGGCTCCTGCCAGCAAGCAGCTAACCACGTCTCTTTCGGGGCTCCATAGACTGCGTTTTTCTTTTTCTGTGCCTTTCTGAATATGGATTTGTGCGCCCACCCCCCATGCCCAAAAGGCCGGTTCATATCCTGCTCAGAGCGGGTCGAGTAGGACCAGTTACAAATGCAATTAACAAATCCTCTAAGGCATCTTTACACAACTGAGTTAAGGCTGTTCTGTGCCTGCTCAAAATTCTGTGTAAAGATACAATGCAGCATAAAAGCCAGACTACATTATGCCTGCTTTGACCCACCTCAGCCCCTTGTATAAAAATATGCATTTATGCCACCTCTGAGCAGCATTAAACAGTCTGTTATAAGACACCTAATTGCCACTTGAAAAGCACTTCTGTGCCACTTCTGCAGTGTAAATGTGGCAATTAGATGCTGTATGAAAAGAATTGCACACAATAGACACTGATTGATTTTTTGAGTGTGTTTTCTGTTCATATTTACGGGTATTTTGATAGCTTTATTTCCATTTTCATGCATTCTATGAACTTTCCATGTGTGGTATTTTTTCATGTGCTTTCTAACAAGGTGAAATATATTTTGAAAGGTGGAACTGTAACATCACTACATCGACTTACTATCTTTTCTCTTTATCACTGCTCTGTGTGCAGGTAATTGTTTTTGTCATATAGCATTTAAGAATTTACTCTGTGTTGTTTAGTAAATGTTTACTGCAAACTGTGTTTTGTAAAGCACTTAATTCATGGTTTTACTAAAAGTCTTATTTCCATTAATTTCATACTACATTTAAGAGTAACATAAAGTGATGATGTAAGCTATGTAATCAGTCTTATATTCAATATTTTATACTTGCTCTATCTATTCATGTCATTCTTAGTTGATGTTGAAAATGTTTTATATGATCACAAAGCAATACATTTGAGAAGAATGAGACAGAAGGGAAAGAACTGTAACATCACTACATCGACTTACTATCTTCTCTCTTTTCCACTGCTCTGTATGCAGGCAA

Function

NR:

description
Zgc:136713 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000319_03483504_03487172.mRNA True 4687 mRNA 0.39 3 3480983 3488654

Neighbor

gene id symbol gene type direction distance location
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 coding upstream 32708 3402112 ~ 3448275 (+)
CI01000319_03394244_03396334 BTR26, BTR18, BTY, BTR25, BTR22 coding upstream 84493 3394244 ~ 3396614 (+)
CI01000319_03389749_03391750 NA coding upstream 88992 3389749 ~ 3391991 (+)
CI01000319_03307678_03308097 NA coding upstream 172520 3306484 ~ 3308463 (+)
CI01000319_03295425_03299640 LSM10 coding upstream 180307 3295425 ~ 3300676 (+)
CI01000319_03500024_03502600 NA coding downstream 10618 3499272 ~ 3502830 (+)
CI01000319_03529404_03549529 NA coding downstream 39426 3528080 ~ 3549725 (+)
CI01000319_03582485_03652347 TRAPPC9 coding downstream 93831 3582485 ~ 3652447 (+)
CI01000319_03786208_03790365 NA coding downstream 297554 3786208 ~ 3791000 (+)
CI01000319_03839724_03847827 KCNK9 coding downstream 351028 3839682 ~ 3848923 (+)
G452051 NA non-coding upstream 16628 3463496 ~ 3464355 (+)
G451741 NA non-coding upstream 104277 3376429 ~ 3376706 (+)
G451666 NA non-coding upstream 105216 3350739 ~ 3375767 (+)
G452053 NA non-coding downstream 17090 3505744 ~ 3506186 (+)
G452045 NA non-coding downstream 47896 3536550 ~ 3539369 (+)
G452107 NA non-coding downstream 188698 3677352 ~ 3678658 (+)
G452113 NA non-coding downstream 199488 3688142 ~ 3688369 (+)
G451662 NA other upstream 146159 3333281 ~ 3334824 (+)
G451677 NA other upstream 251652 3216340 ~ 3229331 (+)
G451500 NA other upstream 642034 2838086 ~ 2838949 (+)
G451485 NA other upstream 736460 2742741 ~ 2744523 (+)
G452043 NA other downstream 10672 3500279 ~ 3500512 (+)
CI01000319_04515268_04534770 NA other downstream 1042965 4515268 ~ 4536025 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other downstream 1298386 4787040 ~ 4790529 (+)
G452541 NA other downstream 1850868 5336085 ~ 5353023 (+)
G452545 NA other downstream 1865040 5353694 ~ 5356035 (+)

Expression


Co-expression Network