CI01000319_03582485_03652347 (TRAPPC9)


Basic Information

Item Value
gene id CI01000319_03582485_03652347
gene name TRAPPC9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 3582485 ~ 3652447 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000319_03582485_03652347.mRNA
ATGAGTGTCCCAGACTACATGCAGTGTGCTGAGGACCATCAGACGGTCCTGGTGGTGGTCCAGCCCGTGGGGATCGTCCCAGAGGACCAGTTCTTCCGCATTTACAAACGCATCGTCAGCGTGAGCCAGGTCAACATACGGGACTCCCAGCGCGTCCTGTTCATCCGATACCGGCACCATTACCCCCCTGAGAACAACGAGTGGGGTGACTTTCAGACTCACCGCAAAGTCGTAGGTCTCATCTCAGTGACCAGCTGCACCACGGCAAAAGAGTGGCCACAGACATCAGACCGTTTCCACGGGCAGAAGGAGGTGTTCGGCTCCACGCTGTACGACTCGCGGCTGCTGGTGTTCGGGCTGCAGGGGGACGTGGCGGAACAGCAGCGCACCGATGTGGCGTTTTACCCCAGCTATGACGACTGTCCTGATGTAGAGAAGCGGGTGGAGGATTTCGTTGAATCCATATTTATCGTCCTGGAGTCGAAAAGGCTGGACAGAGCAACCGATAAATCTGGTGATAAGCTACAGCTGCTGTGTGTGCCGTTCGAGAAGAAGGACTTTGTGGGGTTGGACACAGACAGCAGCCTCTTCCTCTCCCCTTCAGTGACACAGTGGTTGGACCTCGATTCTCTTGTGTCTCAGTTTAGAGTAGAAAGGCACTACAAGAAACGCTGTCAGGGCCGCATGAGGAAACACGTCGGGGATCTGTGTCTGCAGGCAGGGATGCTGCAGGACGCCCTCGTACATTATCACATGGCCGTGGAGCTGCTGCGGTCTGTCAATGACTTCCTGTGGCTGGGAGCTGCTTTGGAGGGACTGTGTTCTGCGTCTGTCATTTTCCATTACCCAGGAGGCACTGCGGGGAAGAGCGGAGCCCGCAAACCTGGCGTCTCCTCTGCTGCTGACGCTGGAAAGAGACACAGACCTGGTGCTCTGACGACCAATGGCATCAGTGCAGACACGAGCGCTGAGATCGGCCGAGCCAAGAACTGTCTGAGTCAGGAGGACATCATTGAGAAATACAAGGAGGCCATCTCTTACTACGGCAAGTATAAGAGTGCTGGAGTGATTGAGCTGGAGGCCTGTATTAAGGCCGTCAGAGTGTTGGCCATTCAGAAACGAGCCATGGAGGCGTCTGAGTTCCTGCAGAATGCTGTTTACATCAACCTTGGCCAGCTGTCAGAAGAGGAGAAGATCCAGCGTTACAGCGTCCTGTCAGAGCTCTACGAGCTCATCGGCTTCCACCGTAAATCGGCGTTCTTCAAACGCGTTGCCGCCATGCAGTGTGTGGCTCCCACCATCCCTGAGCCGGGCTGGAAGGCCTGTTACAAACTCCTTCTGGAGACCCTGCCGGGATACAGCCTCTCTCTGGACCCCAAAGACTTCAGCAAAGACACTCTCTCTACTGTAGAGCTTAGTGTGGATTTGCATGAATTGAGTGAAAGGAACCATAACTACCATGAACTTCAGGAGAGGAAAGGGACCCATCGTGGATGGGCGGCAGTACAGTTGCGGTTGCTTCATGAGCTGGTTTATGCGTCTCGTCGTATGGGGAACCCAGGTCTGTCTGTTAGACACCTCTCTTTCCTGCTACAGACCATGCTGGACTTCCTCTCTGACCAGGCCATGGTCCACTTCACAGCATCCTGTCCCCACAGAGCAACAAACCCCTTCCTCTCGCAGCCGAAAGATGCGGACGGCGTTCTGCGGACCTTTGCGATGGACTGTAACGTCCAATCCATTCCTCCTCACTGCACTGCTGTAAACAGCAATTTTCTGAAGAAGAAAGAAGTCACCCAGAGTTTGGAGAACTACACGTCAAAGTGTCCGGGTGGAATGGAGATGATCAACCTTCCTGACGGACTCAAACTTCCTCCTGTACCATTCACCAAACTGCCCATCGTCAGATCTGTGTCTCTGCTGAACCTGCCAGTGAGTCTTCGTCCTCATAAGGTGAAAGGCCTTCTGGGACAGGGGATGTCCACCGCCAGCCCATTCATCTACTCACCAATCACAGTGCACAGCAGAGGAGATGAGCGCTCCAAGAAGATAGGGGCCCTGAGGAACTGGCAGGAATCTTATGAAGACAGATGGCTGTTCAGTGTGAGGTTGCCCGACTTTTCAAACAAATCATGTTGTATAAGAGTCAGATGGCTGTTTCCAGCCTGTCTTATTTCATTCTGCCAAAACCCACCAACGTCTGCTGCGAGTGCCCGTTTTTTTTTCTTTCCTTGTGTGCTATCCCATGACCACTTGGATACTCCCAATGGTCCCGATTTCACTCTCAATTACGTTGGAATGGTTAGTCAACCGCTTCCGTCACGGGTCGTGATTAGTCACAGGAGTTCCCACGCGGGGAGTTCTTGCTCTCCCCAGATTTTCAGGGTTTACAAAACTCTCACTTCCCCAGATCTGCAATGTGGCCACCGGGCTGTCGTCATAGCTGGAGTGGCCAGGCAGCATTGCTACAGGACAGAGACCAGTGTGAAAAAGAATCATTGCTACAGTGAAAACATAAGCGGCTTTGTTATCGACATAAACATACTTAATTGCTACATTAATTTGTATATGGGTGAATTTCATGAAGTGGTTTCCAGAGGTCTGTGCTGTCTTCTGATGCATTCATATGGAAAACTGTCTCCCACAAAAGGAAGCTCCTTTTTCAACCTTGCTTTAATTTCCCTCAGGAGTGAAGCTTGCCGTTTACTCTGCGTCAGTTCAGTGTTGCCCAACAATTTCCAGTGGGTTCAGGGCGATGTGTGTGAGGTGCAGTTAATGGTCTATAATCCGATGCCATTTGAGCTACGGGTCGAGAACATGTGGGAGAAAACGCTAGGAACAGATTTTATTTGTGAATACTTCTTTTTGAAGTGTATAAAAATGGACAAAATTGTGCTGGAAATGTGTTACATTGCACCCACTCAGGACATGGTGTTTTTTGACAAGGCTCTGGTTGGTTATATGATGTTTTCATTGTGTTTGTTTGTGATTGTGCACTACGGCGAACAATGGAATTATCTGCCCCCAGATGGAATCAGCTTGATGCCCTATAAAACTCCTCTGCCAGGTGTCAGATGGCACCACGGATGGTGCCAAGATGAACCGAAAGCGGGAAAACTCTCCGCGGAGAGCAGCTTGACTTCTGGAGGTATAGTAATAATCGGCCCTCACCTCCACAACGAAGGTGTAAGCGGCTGGTTTTCAATCTGTCTCCGTCTCTCGCTCTCATCTGCCGCTGTGATTCTGGGTCTGTTGACATCAGGTGTGGATTTTGAGTCCCTTCCTGCCGCTCTGTCTTTGCCAGCAGAGTCTGGCCTCTATCCGGTGACTCTGGTTGGAGTTCCACGCACCGCAGGCAACATCACAATCAGCGGGTATCACACATCGGTGTTTGGGGTGAGCAGCGACTGTCTTCTGGAGGGTCTGGTGGGGGTGAAGAGCAGCGGCTGTATGGTGGAGGTGGTGCCATCACTCCCACGACTGCAGCTCTGCACATCTTTACCAAGGTCGGCTCATCTGTCCAGTGAAGATCTGTCCACTAGCGTGTCCCTGCAGCTGTTTAATGGAGAGACCCAGCAGTTGACCATCACCCTGGAGAATATCGGCACAGAGACGCTGAACACGCTGGAGCTGACGTCTAAAACTCTCAGCACTAAAGGTACCCACAACATACAGTCTAAATGTCATCTCGCTCTTTATCGAGCGGTAAATGCTGCGGCGGTTTTGATACAGCGCACGTCCTGTAATGGGACTGCGGTTCAAAGGCTGCGCTGATTGTTCTGAGTTCGTAATAGAGTCTGTGCATTAGTCTGATCACTCGAGCCCATCTGAGATTTCCCTGTGACTCCACTGTTTTGATGTGCTCTCTCTTTGA

Function

symbol description
trappc9 Predicted to be located in Golgi apparatus. Predicted to be active in trans-Golgi network.

GO: NA

KEGG:

id description
K20306 TRAPPC9, TRS120; trafficking protein particle complex subunit 9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000319_03582485_03652347.mRNA True 3874 mRNA 0.52 25 3582485 3652447

Neighbor

gene id symbol gene type direction distance location
CI01000319_03529404_03549529 NA coding upstream 32760 3528080 ~ 3549725 (+)
CI01000319_03500024_03502600 NA coding upstream 79655 3499272 ~ 3502830 (+)
CI01000319_03483504_03487172 NA coding upstream 93831 3480983 ~ 3488654 (+)
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 coding upstream 134210 3402112 ~ 3448275 (+)
CI01000319_03394244_03396334 BTR26, BTR18, BTY, BTR25, BTR22 coding upstream 185995 3394244 ~ 3396614 (+)
CI01000319_03786208_03790365 NA coding downstream 133761 3786208 ~ 3791000 (+)
CI01000319_03839724_03847827 KCNK9 coding downstream 187235 3839682 ~ 3848923 (+)
CI01000319_03873107_03926475 COL22A1 coding downstream 219139 3871586 ~ 3927089 (+)
CI01000319_04002430_04030246 FAM135B coding downstream 349983 4002430 ~ 4030363 (+)
CI01000319_04424107_04437627 NA coding downstream 771375 4423822 ~ 4437847 (+)
G452045 NA non-coding upstream 43116 3536550 ~ 3539369 (+)
G452053 NA non-coding upstream 76299 3505744 ~ 3506186 (+)
G452051 NA non-coding upstream 118130 3463496 ~ 3464355 (+)
G452107 NA non-coding downstream 24905 3677352 ~ 3678658 (+)
G452113 NA non-coding downstream 35695 3688142 ~ 3688369 (+)
G452209 NA non-coding downstream 616324 4268771 ~ 4269460 (+)
G452297 NA non-coding downstream 792120 4444567 ~ 4445315 (+)
G452298 NA non-coding downstream 793516 4445963 ~ 4446197 (+)
G452043 NA other upstream 37766 3500279 ~ 3500512 (+)
G451662 NA other upstream 247661 3333281 ~ 3334824 (+)
G451677 NA other upstream 353154 3216340 ~ 3229331 (+)
G451500 NA other upstream 743536 2838086 ~ 2838949 (+)
CI01000319_04515268_04534770 NA other downstream 879172 4515268 ~ 4536025 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other downstream 1134593 4787040 ~ 4790529 (+)
G452541 NA other downstream 1687075 5336085 ~ 5353023 (+)
G452545 NA other downstream 1701247 5353694 ~ 5356035 (+)
G452543 NA other downstream 1707253 5359700 ~ 5371484 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013779 TRAPPC9 coding NC_007130.7 CM002903.2 4139065 ~ 4341690 (+)
bowfin (Amia calva) AMCG00021748 trappc9,si:dkey-218f9.10,LOC107681624 coding CM030130.1 CM030130.1 27643284 ~ 27680343 (+)