CI01000319_03786208_03790365


Basic Information

Item Value
gene id CI01000319_03786208_03790365
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 3786208 ~ 3791000 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000319_03786208_03790365.mRNA
GGTCGGAGATGCTGTGCCGTTAGAGGTGAAACTGACCAACCGCAGCAAGAGCGCCGTTGGACCGTTCTCTCTGACCGTCGTCCCCTTCCAAGACTATCAGAATGGAGTCCAAAACTTCGACCTGCAGGATGCCGTCACTTTCATCGGCTCCAACACCTTCTACATCGGCACGGTGAACCCCACGGAGAACTCTGTGTGTGTGGGAGCCCTGCTCTTCTTATACACCGGTGATTTCTATCTGAACATCAAGTTTCAGGACGACAGCACGAGCCGCGACCTGCCGCCCGCCTGGTTCTGTCTGCCCAGCGTCCACATCAAAGCCCAGGAGCCAATCGAAGCAGCTGCCTGAACCTGTGAACTCTGACCTCTGACCTGACGGACTCAGTAGGCCTGGGGAGAGATCTGCTGTTATCCAGACCACCACTGAGCGGATCTAGATATTTATTGAGTCTAGAGCAAGTGCAGTTCCAGTGTATAAAGCTTTTAGAGTTTGGAGATGTTTAAATGTATGCCAAATCCTCCACTTTACGTTCAGTCTGACTGTTCTGAACGCATCATGCTCATTTACCTCCACAGGCAAAATGGATGAAGAACATTTTTCAGCTAACCGCTAAGTGAAAACATCAAAGGAGAGTTTACAGTTTAGTCCTGAATCATTCTCTTAAAGTGAAGGAGTTTAAAATGCACTAGATTGCTCAACAACGTCGTGCTTTCAGTGCATGAATCTGATGGAAACATCTCCAGCTCATATTTCAACCCAAAAATAATATAACAAAAATATTAGATTTAGTTGAAGCCTGTTTTTACAACTTTTGTTTTGCCTTATGACATTATTTTAATGACAATTAAGCACAAGTCTCATTACTGTGATGTGTTCGCTTGGGCATTTTGTTTATTCGTTTGTTTTGTAATTCTCATAATCGTAAATGGTGATTCTCATTGAAGTCAATAATTTGAGTATTTAAATATGATTATCTGCATGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000319_03786208_03790365.mRNA True 984 mRNA 0.44 2 3786208 3791000

Neighbor

gene id symbol gene type direction distance location
CI01000319_03582485_03652347 TRAPPC9 coding upstream 133761 3582485 ~ 3652447 (+)
CI01000319_03529404_03549529 NA coding upstream 236483 3528080 ~ 3549725 (+)
CI01000319_03500024_03502600 NA coding upstream 283378 3499272 ~ 3502830 (+)
CI01000319_03483504_03487172 NA coding upstream 297554 3480983 ~ 3488654 (+)
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 coding upstream 337933 3402112 ~ 3448275 (+)
CI01000319_03839724_03847827 KCNK9 coding downstream 48682 3839682 ~ 3848923 (+)
CI01000319_03873107_03926475 COL22A1 coding downstream 80586 3871586 ~ 3927089 (+)
CI01000319_04002430_04030246 FAM135B coding downstream 211430 4002430 ~ 4030363 (+)
CI01000319_04424107_04437627 NA coding downstream 632822 4423822 ~ 4437847 (+)
CI01000319_04478393_04509691 CDK12, CDK13 coding downstream 687393 4478393 ~ 4510337 (+)
G452113 NA non-coding upstream 97839 3688142 ~ 3688369 (+)
G452107 NA non-coding upstream 107550 3677352 ~ 3678658 (+)
G452045 NA non-coding upstream 246839 3536550 ~ 3539369 (+)
G452053 NA non-coding upstream 280022 3505744 ~ 3506186 (+)
G452209 NA non-coding downstream 477771 4268771 ~ 4269460 (+)
G452297 NA non-coding downstream 653567 4444567 ~ 4445315 (+)
G452298 NA non-coding downstream 654963 4445963 ~ 4446197 (+)
G452299 NA non-coding downstream 655491 4446491 ~ 4446725 (+)
G452300 NA non-coding downstream 656789 4447789 ~ 4448033 (+)
G452043 NA other upstream 241489 3500279 ~ 3500512 (+)
G451662 NA other upstream 451384 3333281 ~ 3334824 (+)
G451677 NA other upstream 556877 3216340 ~ 3229331 (+)
G451500 NA other upstream 947259 2838086 ~ 2838949 (+)
CI01000319_04515268_04534770 NA other downstream 740619 4515268 ~ 4536025 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other downstream 996040 4787040 ~ 4790529 (+)
G452541 NA other downstream 1548522 5336085 ~ 5353023 (+)
G452545 NA other downstream 1562694 5353694 ~ 5356035 (+)
G452543 NA other downstream 1568700 5359700 ~ 5371484 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013780 trappc9 coding NC_007130.7 CM002903.2 4443285 ~ 4447733 (+)