CI01000319_04478393_04509691 (CDK12, CDK13)


Basic Information

Item Value
gene id CI01000319_04478393_04509691
gene name CDK12, CDK13
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 4478393 ~ 4510337 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000319_04478393_04509691.mRNA
AGCTTTTTGGAAAATATACGGATATCTACAGCAAATTAATCGACTATTACTCAACTACAAAACCGCAACTGCAAACTCGGCATACATTCGCTGTTGATGAATGCTTACGAAGGTCCGCGTCTCCGGAGGACAGAGGTATGCCTGGATCAGACCGCCTGCATGGGACCAAGAGGAAGGCTGAATCGCTGTATCATCATCAGCTACAGGCGGCCACCGGGGACGGCCAGCCTTTGCACGCGGGCTCCGGTCGGCTTCCCACAAAGACGACGAGCTCGTCCACTTCTTCCAAGCACAAACGAAACAAGTCCAAACACGAGGCCGAAACCGGCTCCGTGCGCGCTGCTGCCGCGCCTCCAGCAGTGGGCGCCATCAAGCCTCTGGTGGAGTACGACGACATCAGCTCCGACTCGGACACGTTCCTGGACTCCCCCGCCACCGGGAAACCGGTGGGGAGCGGAGACGCCGACCGCCTAGAGCTGTCGGACTACGGTGAGGCGGGGGTTGCGAAAGAGAACAGGGCTCATAAACACAAGCGCTCCCGGAAGAAGTCCAAAGACCCGAATCGGGTCAGGGAGTCTTCGGAGAGGGCAGAAAGCGGAAAGAAAAGCAGTAAGGACCGGGAGAGAACGAGCAAAGAGAGCCGAAAGAAGGCCAAGGAGAAGTCCAGCCCAGCCGCGTGCCTTGCTTCTACATCCAGACGCTCAGGTGAGTCCAGTAGTAAGAAGTCCGGCGAGTCTCTCTCATCCACCGCGGTGCAGTCAACGGTCAGTCTAGGGAGCAGCGCCTCCTCCGCATCCTCCTCCGTCAGTAAGGAAAGTGGCCGTTCATCAAAGTCTCGCAAAGACAAGCGGAGGAGCGAGGAGTATGAGGAGGACCGCAGCCATCGGAAAGCCGCCAAGAGCCACAAGTCGAGCCCTAAAGGAAAGGGCCAGTCCAGGAGAAGTGGAGCGGACAGTCCTTCCACTGCGGAACACGACAACAGCTATTCCTCCAGACGCAGGGCCGCGAGCCCGAGTCCGTATAGGGAGCCGCCCAGGCGGAGTAGACAGAGGTCTGAGAGCCCCTATGGAAGACGGAGGTCTTCAAGCGCTGAGAAGGATGGAAGTCCGTATGTAAGCAGAAAACACTCACCTGGAAGTCCCTACGGCAACCGACGCTCATCCAGCACCAGTCCAGTGTCCAGGCCTTCTCTGCGTTCCCGGAGCCGTTCTCCTCACTACTCCTCCTCACGCCGCTCCTCTTCCCATTCTCGCACTAAGAAACATTCTTTATATTCCGGAGGAGCCAGCGGAGGCTCCTCCCACAGCAATCACCCAGGCAGCCGCTCCCCTTCGTCTTCACGTTTGCCGATCACGTCCAGCCTCGGAGCCGAGCTGACGCGAAGAAAGAAAGAGCGTCAGGCGGCTGCCGCCAAGAACTCTCCCTCCCTCCGCCTGAACACGTCCAATGTGGCAAATGCACCGGTGAAAAACACTGAGCCGCCACTAGAGACGGCCCCGCCCCCTGAGCCTCAAAGACCGCCTTCCCCACCTCCGAACATTGTTACGGCGGAGGAGCCTGCTGTGCCCCACACAGAAATCTACCCAAAGTCCTGCACACCTGATGAAGACATCCACACTTCCACCTCTTCCCCTGCCGCCGGTTCTTCTGGGAGACTGCAGGGACAGTCCCCTGCTCGAGTTTCCCCACCGCTTCTGCAGCCAACCTTCAAGAAGAGACCAAAGATTTGCTGTCCGAGATATGGCGAGAGGAAGCAGACTCAAACTGACTGGGGAAAGCGCTGTGTGGATAAGTTTGACATCATCGGCATCATTGGAGAAGGAACCTACGGTCAGGTGTACAAAGCAAAAGACAAAGACACAGGAGAGCTGGTGGCATTGAAGAAGGTGCGATTAGATAATGAAAAGGAGGGTTTCCCCATAACTGCCATTAGAGAGATCAAGATCCTGAGACAGCTGAACCATCGCAGCGTCGTCAACATGAAAGAGATCGTCACTGATAAACAAGACGCACTTGACTTCAAAAAGGACAAAGGTGCGTTTTACCTGGTGTTTGAGTACATGGACCATGACCTGATGGGGCTGCTGGAATCAGGATTGGTGTCTTTCTCCCATGAGCATGTGCAGAGTTTCATGCGTCAGCTGATGGAGGGATTAGATTATTGCCACAAGAAGAACTTTCTACACCGAGACATCAAGTGTTCCAATATCCTGCTAAACAACAGTCGGCCATACACTAATAAGGTGATCACTCTGTGGTACCGCCCACCTGAGCTGCTACTGGGGGAGGAGAGATACTCTCCTGCTATTGATGTCTGGAGTTGCGGGTGTATTTTGGGAGAACTCTTCACTAAGAAACCAATTTTCCAGGCCAACCAAGAGCTTCTACAGCTTGAGCTGATCAGTCGTTTGTGTGGTAGTCCGTGTCCTGCTGCTTGGCCAGACGTAATTAAGCTGCCGTACTTCAATACCATGAGACCCAAGAAACAGTACAGACGACGCTTACGAGAGGAATTCGCCTTTCTGCCCACCTCTGCTCTTGAACTGCTGGACCACATGTTAACGCTGGACCCCTCGAGACGCTGCACGGCCGAACAGGCCCTGGCCAGCCAGTTTCTGTGTGATGTGGAGCCCAACAAGATGCCACCACCAGATTTGCCTCATTGGCAAGACTGTCATGAGCTTTGGAGCAAGAAGCGGCGGAGGCAGAGGCAAAGCGGAGTGTCTGAGGATTTACCTGTTGCCAAAGTTCCCCGAAAGGAACCTGCAGTAGCTTCAGGCGGGGAGAACAGCCGCCCGCCACCGAGCCCACCCCCACCACCACCCTCATCTGCCCATCCTGCACCGGCAAACATCACAGCCAGTGAGCTGGAAGGTTTGGGAGCCGCAGCGGAGCAGTTGAACCAGACTGAGCTGGCGGTGCTGCTGAACCTGCTCCAAGGCCAAACAGACAATCTAACCATCCCGCAGATGGCGGAGTATCTCCGCAGCACCTCCTCTGAAGCCTCAACGTCAGTGCTCTCCAGCACGCCTGCCGCCCCCTCCACCCCTGAACCGGACGCCGCGCAGCAGCTCGAACTGCTCAGCCAGCTTTCCACCCTAATCCAGTCCTCTAGTGTCCCGCAGCCGTCAGAAGTCCCGCAGGAAGACCAGACCGGCCTGCTCGCGCTCCTGTTGGAGCAGCTGATAAAGGCTCCAGCGCCAGGAGCGGAGCGGGCAGACGAAAGCAACGGAGTCCGGTCGGACGAGGATGCTGCAAAACACGCTCAAGGAGTTACTTCAGACGTAGCGGCGACCCTTCTCCAGCTCATCTCCCAGCAGGCCTCGGACAGCAGACGTCCTCCTGCAGACCTGCATCCCAGTCGGGGTCCCTCCTCTCCCCTAAACGCGACCCCACCGCCAGCTTCCTCTTACGCCCCCTCGCCCGCCGCAGGCCTGGCAACCGCTGCTACAGAAACTCAGTTCACCCAGGACCAAGACTTGCGGTACACCCTGGGAGGAGCTGCTGGCCCTTCCTAAATCGTTGCTGTGAACTTTATCTTTTGGTTGTTTTCATTTTTGCTTAATGTGCTTTACATGTTAAACTTCCGTTTACTACTCATTAATGTATTTCTTTCTTCCGTTAAAGGAAAAAGTGAATGTTAAAGGAACTGTTCATGAATGCGAATGGATGATGTTCATCCCTCCCAACGATGTACAGCATTATTTGAGGGCCGTCTTTTACTGCAACAGTCTGTGAGTTTTAGCCATGTGCAATTTCCTTTAGGGCTGCGTAAGTGTATTTAAATCAAGCTACTTTCTCTGAAAGACGTTTCTTCCTTTAGTGCTGATATGAAGCAAGGGACTCGTTCCGGCTTGAGCTACTTCGTCCTTTCTGATTCAGTACAAAGGCAGAAGGAGAACTTGAAGTAATTTGCAGTACTTGAGTGAGGCCTTCTTTTTCAACTATTCATATAAGCTTGTGCTAAAGACGCGTTTTTATTTTGATTTTTGGTGGGTGGAAAATGTGTGTCCTTATCCAAATATTATCGTCAGGACCACATGGTTGAGCAAAGTTCATTTAGTTCGAAGGCATCTTCAGAAAGACACTGAACTGAATTAAATTTTAGCAACAGAATTGCCATTTTGATTTGACACCGCCAAATGTACATGTTGTAAAATGATA

Function

symbol description
cdk13 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity; cyclin binding activity; and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in phosphorylation of RNA polymerase II C-terminal domain; positive regulation of transcription elongation from RNA polymerase II promoter; and transcription elongation from RNA polymerase II promoter. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in congenital heart defects, dysmorphic facial features, and intellectual developmental disorder. Orthologous to human CDK13 (cyclin dependent kinase 13).
cdk12 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity; cyclin binding activity; and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in phosphorylation of RNA polymerase II C-terminal domain; positive regulation of transcription elongation from RNA polymerase II promoter; and transcription elongation from RNA polymerase II promoter. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in congenital heart defects, dysmorphic facial features, and intellectual developmental disorder. Orthologous to several human genes including CDK12 (cyclin dependent kinase 12).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K08819 CDK12_13; cyclin-dependent kinase 12/13

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000319_04478393_04509691.mRNA True 4164 mRNA 0.54 15 4478393 4510337

Neighbor

gene id symbol gene type direction distance location
CI01000319_04424107_04437627 NA coding upstream 40546 4423822 ~ 4437847 (+)
CI01000319_04002430_04030246 FAM135B coding upstream 448030 4002430 ~ 4030363 (+)
CI01000319_03873107_03926475 COL22A1 coding upstream 551304 3871586 ~ 3927089 (+)
CI01000319_03839724_03847827 KCNK9 coding upstream 629470 3839682 ~ 3848923 (+)
CI01000319_03786208_03790365 NA coding upstream 687393 3786208 ~ 3791000 (+)
CI01000319_04515268_04534770 NA coding downstream 4931 4515268 ~ 4536025 (+)
CI01000319_04536287_04545417 STARD3 coding downstream 25950 4536287 ~ 4546868 (+)
CI01000319_04550077_04553516 MREG coding downstream 38632 4548969 ~ 4555108 (+)
CI01000319_04581466_04584558 ENO2, ENOG coding downstream 71129 4581466 ~ 4584565 (+)
CI01000319_04626091_04632375 ZNF646 coding downstream 115423 4625760 ~ 4632569 (+)
G452306 NA non-coding upstream 1060 4477095 ~ 4477333 (+)
G452267 NA non-coding upstream 25928 4449389 ~ 4452465 (+)
G452300 NA non-coding upstream 30360 4447789 ~ 4448033 (+)
G452299 NA non-coding upstream 31668 4446491 ~ 4446725 (+)
G452298 NA non-coding upstream 32196 4445963 ~ 4446197 (+)
G452277 NA non-coding downstream 6355 4516692 ~ 4518033 (+)
G452309 NA non-coding downstream 38270 4548607 ~ 4548821 (+)
G452257 NA non-coding downstream 50702 4561039 ~ 4561688 (+)
G452256 NA non-coding downstream 65035 4575372 ~ 4582676 (+)
G452043 NA other upstream 933674 3500279 ~ 3500512 (+)
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 other upstream 1057793 3402112 ~ 3448275 (+)
G451662 NA other upstream 1143569 3333281 ~ 3334824 (+)
G451677 NA other upstream 1249062 3216340 ~ 3229331 (+)
G451500 NA other upstream 1639444 2838086 ~ 2838949 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other downstream 276703 4787040 ~ 4790529 (+)
G452541 NA other downstream 829185 5336085 ~ 5353023 (+)
G452545 NA other downstream 843357 5353694 ~ 5356035 (+)
G452543 NA other downstream 849363 5359700 ~ 5371484 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location