CI01000319_04536287_04545417 (STARD3)


Basic Information

Item Value
gene id CI01000319_04536287_04545417
gene name STARD3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 4536287 ~ 4546868 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000319_04536287_04545417.mRNA
ATGGTGGCACAGTGGTTCTCTGTCTCTGATGCGTTCAAAATCTGGGCCGAAACTGATCTGGCTTGGATTCCCATAAGAGCTGGCGGATGTGACGTTCTTTCACATCCGGTTATTATCGCGGAAGAACTGCAGGCTGATAATGAGAGTGATGCGCTGATTTTTGGTGATGCGCTCCAACTGCATGTAGGTATGCCTAGCGGCGTAGACTACAGAGAGTTGGAGGGAAGTCTTCCAGCCATTGCTTCTTTAAACGCCTCGTATTCCCAGGCGTCCCTCTCCCTTCCCTCCCCTTACTATCCCCCGCTGCCCCCGGGAGAGAGGAAAGCCTTCTCAGACGTCCGCCGAACATTCTGCCTCTTTGTTACGTTTGACCTCCTCTTCATCACTCTGCTCTGGATCATTGAATTAAATCTTTTAGCTGTGTTTAGATTTCTGTGTTTGCAGATTGGTTATGCTGCATTTCGATTGAGACACTGGTGGGTCATTGCGATCACTACTCTGGTAACCAGCGCCTTCCTCATCACCAAGGTCATCATATCAGATTTGTTTAGTCAGAATGCTTTTGGCTATGTTCTTCCCATCACCTCGTTTGTGGTGGCATGGTTGGAAACCTGGTTCCTGGATTTCAAAGTGCTCACACAGGAAGCAGAGGACGAGAGAGTGTATCTGGCAGCAGTTAATGCGGCATGTGAGCCGGCCCCTCTATTAGGTCCTAGAGCAGTGTCTGATGGACAGTTTTACTCTCCGCCGGAGTCCCTAGCAGGTTCTGAGGAAGATCTTGATGAAGAGGGTATTGGCAGGAGAGCAGTAACAGAACAAGACAAGGAGTTTGTACGACAGGGACGGGAGGCCATGGCAGTGGTGGAACAGATACTCACACAAGAGGAAAACTGGAAGTTTGAGAAGACTAGTGCACTCTTGCAGTGTTCTGCAGAGCTGGTGTATCAGGAGGTCATTTTGCAGCCGGAGAAGATGGTGCAGTGGAACAGAACAGTGTCTGTTTGTCAGATTTTACAGAGAGTGGATGACAACACAATGGTGTCATATGATGTATCTGCAGGAGCTGCTGGAGGTGTTGTGTCTCCCAGGGACTTTGTGAATGTTCGTCGGGTGGAGCGCAGGCGAGACTGCTACATTTCTGCAGGAATGGCGACCAACTACATCAGCAAACCCCCTCATAATCGCTACGTCAGAGGGGAAAATGGTCCTGGTGGATTTGTGGTGTTGAAATCCAACAGTAATCCTTCAGTTTGCACCTTCATCTGGGTTCTCAATACAGACCTAAAGGGTCGCCTCCCACGTTACCTCATTCACCAGTCACTGGCCGCCACCATGTTTGAGTTCATGTCTCATCTCAGGCAGCATATAAATGAAGTCCACGTCCCCTACCGGTGATCTCTGGCTTTGACTCTTTATCCAGCCACAGTTTACATCGTGGTAACTTCAAATTACACTGCGCCATATTCATTCTCCTCTAAACTACAGTTGTCATGAGGAGATACAGCACTGCTTTTGACTGGCAGGAGGTTGTTACAGGCTGTCTCAGTGTTTGGCTGCACTTTATACTGAAGTTAAAGCTGATATAGATGTACTACTGCAGCACATGGACATAAGGTCAGAAATCATTCTGTCAAATCACACAAGAGCTGGAAACATGCACAGGAAGTTATCAGAGAGCAGCTTGTGGTGTGTAGGGGGAAATGGATATTATTCAGCTGTGCCTAAACCACTGTTGTCCCCCTAGTGAACATGACTGAAGGCTAGGATGATTTCTGTACAATATTCTGAGCCAAATCCACTGCGGTTTCTCATTCTGCTTTACTTGTGCCTTAATCGAACATGCATACACATTCATAATAATATTAATTATCGTTTGAGTTCTTATTATGGTTTGTAATTGGCTCTTGTGGCCAAACTTTGCTGCATTAGATTATGTATTCATCTGTAGTGTATAGATCAGTGTTCAGCTATGTATGATAATTTTGTCTAATAATAATGCATACGGTTAAGAGTTTGATTATGCAGTTGTCTTAAATCAACATAATCGGTTAACTAGTACCAAAATACTTGTAGCATGTGTAAAACATGCTGCAGCAACAACAACAAAATACTGAAGCAAACATTTGCGCTTGGTTTTAATCAATCTGACGAGAATATAATGGGCCTTTTATTGAAATGTGCATTTATTACACTTATTTCTGTATTGCATGTCAGTTTGTTTTCACACAGAGCATTACTGTCAGCCTTTTATTGGGTATACACTCATGTTTACCACATTTATATTGGGCATAGCATTTTATATATAAAAAAAAAAAATGAAACAGGAAACTAAGGCATGGTCACCAGTCGTTTGATTATTATTGCCACTATTAGAAATGCCACTAGTAAAATGTGAATGTATCCTTCATGAAGAGTTGCCTTGAAGCAAGCAAAATACTTTTGCTTTTAATGCAGAGAAGACATTCTTACAGGGTTTTTTTTTAAGGGATGGCACGTTTAAGTTGGTTGATCAGTGATGATGTGAATGATGTTGATCTTTTTAAACAGTCTTGTTCTTGTTTGTTGGTTTGTACTTGTGTGCCTTTGTTACAGTTTTCCTCACTGAAATCACAGATTCAGGATTGCTTACGTTATTTCGATTTATTTTTTATCTGTACACTTTTTTTTGGCCTCTACAGACTGTAACCACATTTCTTTGTGCAGAGCCTTTTGAAGTTCACTTGAATTCACTTCTGATTCAGGTTCTGTGTGAATTATTATTTTTATACTGATTTACAGTAATAGTATACAGAATTTTGTCACGTCATTCAAAAATCTGAATTTCTGCTGAATGCAAGAATCATTTA

Function

symbol description
stard3 Predicted to enable cholesterol binding activity and protein homodimerization activity. Predicted to be involved in cholesterol transport and vesicle tethering to endoplasmic reticulum. Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum-endosome membrane contact site and late endosome membrane. Predicted to colocalize with endoplasmic reticulum membrane. Is expressed in yolk syncytial layer. Orthologous to human STARD3 (StAR related lipid transfer domain containing 3).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000319_04536287_04545417.mRNA True 2846 mRNA 0.43 14 4536287 4546868

Neighbor

gene id symbol gene type direction distance location
CI01000319_04515268_04534770 NA coding upstream 1385 4515268 ~ 4536025 (+)
CI01000319_04478393_04509691 CDK12, CDK13 coding upstream 25950 4478393 ~ 4510337 (+)
CI01000319_04424107_04437627 NA coding upstream 98440 4423822 ~ 4437847 (+)
CI01000319_04002430_04030246 FAM135B coding upstream 505924 4002430 ~ 4030363 (+)
CI01000319_03873107_03926475 COL22A1 coding upstream 609198 3871586 ~ 3927089 (+)
CI01000319_04550077_04553516 MREG coding downstream 2101 4548969 ~ 4555108 (+)
CI01000319_04581466_04584558 ENO2, ENOG coding downstream 34598 4581466 ~ 4584565 (+)
CI01000319_04626091_04632375 ZNF646 coding downstream 78892 4625760 ~ 4632569 (+)
CI01000319_04697405_04706265 NA coding downstream 148295 4695163 ~ 4706544 (+)
CI01000319_04714806_04715176 NA coding downstream 167938 4714806 ~ 4715569 (+)
G452277 NA non-coding upstream 18254 4516692 ~ 4518033 (+)
G452306 NA non-coding upstream 58954 4477095 ~ 4477333 (+)
G452267 NA non-coding upstream 83822 4449389 ~ 4452465 (+)
G452300 NA non-coding upstream 88254 4447789 ~ 4448033 (+)
G452309 NA non-coding downstream 1739 4548607 ~ 4548821 (+)
G452257 NA non-coding downstream 14171 4561039 ~ 4561688 (+)
G452256 NA non-coding downstream 28504 4575372 ~ 4582676 (+)
G452274 NA non-coding downstream 48801 4595669 ~ 4601541 (+)
G452261 NA non-coding downstream 118252 4665120 ~ 4761324 (+)
G452043 NA other upstream 991568 3500279 ~ 3500512 (+)
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 other upstream 1115687 3402112 ~ 3448275 (+)
G451662 NA other upstream 1201463 3333281 ~ 3334824 (+)
G451677 NA other upstream 1306956 3216340 ~ 3229331 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other downstream 240172 4787040 ~ 4790529 (+)
G452541 NA other downstream 792654 5336085 ~ 5353023 (+)
G452545 NA other downstream 806826 5353694 ~ 5356035 (+)
G452543 NA other downstream 812832 5359700 ~ 5371484 (+)
G452735 NA other downstream 1161294 5712686 ~ 5712732 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location