XLOC_013041 (napab)


Basic Information

Item Value
gene id XLOC_013041
gene name napab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 44673990 ~ 44696815 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025922
TTTCCGCAGAGATGTGTTGATGTGGCTGGATTCCAGAGTTTGCTGCTAAAGTtgaactgtaaacaatattcatGGATAACACCGGTAAGGAGAAAGAAGCCACGGCTCTCATGGCAGAAGCCGAGAAAAAAGTCAAATCCTCGCAGTCGTTCTTTGGCTCCCTGTTTGGGGGCTCTTCAAAGATGGAGGACGCATGTGATCTGTATGGAAGGGCTGCAAACATGTTCAAGATGGCCAAGAACTGGAGTGCTGCAGGAAACGCTTTTTCTCAGGCGGCTCTTCTACACCTGCAGATGCAGAGTAAACATGACGCAGCCACAAACTTCATTGATGCCGGCAATGCCTTCAAAAAGTCAGACCCCCAAGAGGCCATAAACTGCTTGAACAGGGCCATTGAGATTTATACAGACATGGGCCGATTTACAATCGCAGCGAAACACCACGTCACCATTGCTGAAGTTTATGAGACTGAACTGGTCGACATTGACAAGGCAATTGCTCACTACGAACAGGCGGCGGACTATTATAAAGGCGAGGAGTCCACAAGTTCAGCCAACAAGTGTCTTCTCAAAGTTGCCACCTATGCAGCTCAACTGGAACAGTACCCTAAAGCCATCGAGATATATGAAcagGTTGCAACACATGCGATGGACAGCACTTTACTGAAATACAGCGCAAAGGACTATTTCTTTAAAGCCGCTCTCTGTCACTTCTGTGTTGACATGCTGAACGCTAAGCTTGCCCTTCAGAAATACGAAGAAATGTTTCCAGCCTTCTCAGATTCTCGTGAATGCAAACTCATGAAGAAACTTTTAGATGCCTTTGAGGAGCAGAATGTGGATGCGTACACTGATGCTGTGAAGGAGTACGACACCATCTCACGGTTGGATCAGTGGCTCACAACCATGCTGCTTCGTATCAAGAAGAACATACAAGACGAAGAAAACGGCCTTCGCTAAAACCTCCTTTCTCGcttctgctttttttttgtttttggccgACTATCACCATCTCTCTCATTTACCAGCCACTCGACTCTCAGTGCCTTAATTTCCACACTTTACCTCAAACAAATCTCTCTCTTACATGGCATGCTGCTCAAACAAGGACACAGCCGCACCACCAGACCCTTAAAGAACACTAAAAAAAGAAAGGCTGGGTGTTTAAATGGGATTTGATTTGAGGGAGTTTGTGCATGAGAAGTAAAACCAACTACGTTAATAATTTGGTGTGCTGTGCACGCCTACCTTCAGAAGTGCCTTGTGTTCTGGCTGACGCAGAGCACCTGGACTCCTGAGCACATAAAAACCCTTTGTTCAATCTATTAACCTCTTTagtggaaatatattttaaataccaaATCTTGTACCCTTCACATTTTTGCTTGCTGATTTGTGCATGGACTAATctcaaaacattatttgaaatgctgttcgtttttttttttttgtattttgacatACGAGAGTAAAAGAAAGACTGATCCAGACTGTATTGTGATTTCATTGCCTtctaaaaaaaatgactttttgatGTGGTGAAATTGCTTAAATTGCTTGTGAAATTAGATGATGATTATGTATTACAA

Function

symbol description
napab Predicted to enable soluble NSF attachment protein activity and syntaxin binding activity. Predicted to be involved in several processes, including SNARE complex disassembly; glutamatergic synaptic transmission; and regulation of synaptic vesicle priming. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of synaptobrevin 2-SNAP-25-syntaxin-1a complex. Predicted to be active in vacuolar membrane. Is expressed in head. Orthologous to human NAPA (NSF attachment protein alpha).

GO:

id name namespace
GO:0035494 SNARE complex disassembly biological_process
GO:0006886 intracellular protein transport biological_process
GO:0035249 synaptic transmission, glutamatergic biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0010807 regulation of synaptic vesicle priming biological_process
GO:0005774 vacuolar membrane cellular_component
GO:0070044 synaptobrevin 2-SNAP-25-syntaxin-1a complex cellular_component
GO:0016020 membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005483 soluble NSF attachment protein activity molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5290 Predicted to enable soluble NSF attachment protein activity and syntaxin binding activity. Predicted to be involved in several processes, including SNARE complex disassembly; glutamatergic synaptic transmission; and regulation of synaptic vesicle priming. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of synaptobrevin 2-SNAP-25-syntaxin-1a complex. Predicted to be active in vacuolar membrane. Is expressed in head. Orthologous to human NAPA (NSF attachment protein alpha).

Ensembl:

ensembl_id ENSDARG00000020405

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025922 True 1588 mRNA 0.43 11 44673990 44696815

Neighbor

gene id symbol gene type direction distance location
XLOC_013040 bicra coding upstream 10746 44630415 ~ 44663244 (+)
XLOC_013039 NA coding upstream 81373 44591207 ~ 44592617 (+)
XLOC_013038 dhx34 coding upstream 83898 44566863 ~ 44590092 (+)
XLOC_013037 st14a coding upstream 107802 44532199 ~ 44566188 (+)
XLOC_013036 BX908388.1 coding upstream 519719 44153674 ~ 44154271 (+)
XLOC_013042 b3gnt2l coding downstream 6528 44703343 ~ 44709050 (+)
XLOC_013043 si:dkey-224e22.2 coding downstream 49779 44746594 ~ 44765515 (+)
XLOC_013044 ilvbl coding downstream 72014 44768829 ~ 44794015 (+)
XLOC_013045 fam118b coding downstream 98896 44795711 ~ 44820746 (+)
XLOC_013046 arfgap2 coding downstream 152994 44849809 ~ 44874334 (+)
XLOC_013035 BX908388.2 non-coding upstream 554728 44119137 ~ 44119262 (+)
XLOC_013033 NA non-coding upstream 633488 44028378 ~ 44040502 (+)
XLOC_013032 CR925719.1 non-coding upstream 667302 44006572 ~ 44006688 (+)
XLOC_013047 CR792424.1 non-coding downstream 238358 44935173 ~ 44980093 (+)
XLOC_013048 CR792424.2 non-coding downstream 354020 45050835 ~ 45050950 (+)
XLOC_013050 BX908385.1 non-coding downstream 562166 45258981 ~ 45259097 (+)
XLOC_013051 BX908385.2 non-coding downstream 617153 45313968 ~ 45326757 (+)
XLOC_013052 NA non-coding downstream 759847 45456662 ~ 45478424 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_03194134_03203570 NAPAB, NAPA.L, NAPB.S, NAPA coding CI01000028 null 3193259 ~ 3205414 (-)
bowfin (Amia calva) AMCG00013647 napa,LOC108413256,LOC103368726 coding CM030125.1 CM030125.1 38451789 ~ 38458783 (+)