XLOC_013042 (b3gnt2l)


Basic Information

Item Value
gene id XLOC_013042
gene name b3gnt2l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 44703343 ~ 44709050 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025923
CAGTAGGAAACAGCACACGGCGGTGGAGGTGCTGCTGTGGTGGCTACAACTAGCTTTCCTCTCGTTGAGGAAGACGTTTGGACTAAGAATGTTAATAGATGTTCACAAGGCTCACGGCTGAACTCGACACCACTGGGGATACAATAAACGTAATTACATGGAAGAAGCATCCAACAAGATGTTTGTCATGGCTGTGAATAGCAAATGTTGAGGTCAGCCATCATTGATCCCCAAGGATGAACAAATGAAGAGACAGCGCTGCGCTTCAGAGGTTAATTCTGTTGTGTGAATCCTCACCATTTCCTGTATTGCCCAACATCCTTTCTTGCGCTTCAAGAGTGAGCTTCTCTTAGCACGGTTGTAAAATGGGAAAGAAGTACATGAAGTTCCTCATCGTGGCGCTAGCTAGCAGcctttgctttattttgttctATTCCAAACTAGTGGACGTGGAAATAACCGCCAAAGATAAAATCACATCAGTCACGGCTTCCATTCCCAGAAAGCCGACAACAGCTTTAGTAAGCACTATCAAGAAACAAACCAAAGGTGTTGCACCATTCAAACTTCCACCGCTGACTATTTCCAACGATTTCAGAAAGAGCGTCCCCAAAAACGGCGCCTTCTGGAATCGAAAACTCCATTCCTTTCTGAGGCAGCTGGACTCCGCTGACAATACAACAGACCCGCGGAAGAAGTTTCACTGCAGTCCGGAGAGTTTTGAGTTGCTAAAGATGAACATTCAGGATGTTAATACATACCCTCCGCTCTATGGAGACTTCCTTCGAGGAATGGAGTGTCGAGACTCGCCGCTAGTTATTAATCAACCGGACAAGTGTGCGTTGGATAATGAAGATGATCGCATCTTTCTACTCTTTGCAATCAAATCCACGCCAAAGCACTTCGAGAGGCGTCAAGCTGTCCGGGAGACCTGGGGCAGAGAAGGAGAGTATGATGGACTCAAGGTACGAACCGTCTTCCTGCTAGGTCGTTCGTCTTTAGACGACCCAAATCTGGACAAACTCATTTTGTCGGAGTCTCAGCATTTCCAAGACCTTCTCGTTTGGGATTTCCACGACTCCTTTTACAACCTGACTCTTAAGGAACACGTGTTTTTCAAGTGGATGCTGGGACACTGTCCTCGTGTGTCCTTCATTTTTAAGGGGGACGATGATGTTTTTGCTAACCCCCAAGCAATAATCAATCATCTGACATCTCTGGAGCCAGAGCAGGCTTCATCGTTGTACACTGGGCAGATCATTTCTGAGGCCACACCATTACGAGATCCGAAAACTAAATATTGTGTACCCCTGACTTTCTATGAAGGTGCTTACCCTCCGTATGCTGGTGGTGGGGGGTTCCTCTTTTCTGGGGAACTTCTCCCATACCTTTACCATGTTTCCTTTTACATCCCCTTCTTTCCTATTGATGACGTCTACACTGGGATGTGCTTTAAAGCACTTGGAATCAGTCCGATGAAACATGATGGGTTTAGGACCTTTGATATTCGGGAGCAAGACCGAGAGAACCCATGCGTGCACAAACACCTGCTACTGGTGCACCGGCGCAGCCCTCAGCAGACCATGAGGCTCTGGAGGAGCATGCACAGCTCCATGCTCACCTGCTGA

Function

symbol description
b3gnt2l Predicted to enable protein N-acetylglucosaminyltransferase activity. Predicted to be involved in poly-N-acetyllactosamine biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Orthologous to human B3GNT8 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0030311 poly-N-acetyllactosamine biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0008532 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061207-60 Predicted to enable protein N-acetylglucosaminyltransferase activity. Predicted to be involved in poly-N-acetyllactosamine biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Orthologous to human B3GNT8 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8).

Ensembl:

ensembl_id ENSDARG00000068219

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025923 True 1628 mRNA 0.47 2 44703343 44709050

Neighbor

gene id symbol gene type direction distance location
XLOC_013041 napab coding upstream 6528 44673990 ~ 44696815 (+)
XLOC_013040 bicra coding upstream 40099 44630415 ~ 44663244 (+)
XLOC_013039 NA coding upstream 110726 44591207 ~ 44592617 (+)
XLOC_013038 dhx34 coding upstream 113251 44566863 ~ 44590092 (+)
XLOC_013037 st14a coding upstream 137155 44532199 ~ 44566188 (+)
XLOC_013043 si:dkey-224e22.2 coding downstream 37544 44746594 ~ 44765515 (+)
XLOC_013044 ilvbl coding downstream 59779 44768829 ~ 44794015 (+)
XLOC_013045 fam118b coding downstream 86661 44795711 ~ 44820746 (+)
XLOC_013046 arfgap2 coding downstream 140759 44849809 ~ 44874334 (+)
XLOC_013047 CR792424.1 coding downstream 226123 44935173 ~ 44980093 (+)
XLOC_013036 BX908388.1 non-coding upstream 549072 44153674 ~ 44154271 (+)
XLOC_013035 BX908388.2 non-coding upstream 584081 44119137 ~ 44119262 (+)
XLOC_013033 NA non-coding upstream 662841 44028378 ~ 44040502 (+)
XLOC_013032 CR925719.1 non-coding upstream 696655 44006572 ~ 44006688 (+)
XLOC_013048 CR792424.2 non-coding downstream 341785 45050835 ~ 45050950 (+)
XLOC_013050 BX908385.1 non-coding downstream 549931 45258981 ~ 45259097 (+)
XLOC_013051 BX908385.2 non-coding downstream 604918 45313968 ~ 45326757 (+)
XLOC_013052 NA non-coding downstream 747612 45456662 ~ 45478424 (+)

Expression


Co-expression Network