CI01000319_05618356_05625888 (FLOT1, FLOT1A)


Basic Information

Item Value
gene id CI01000319_05618356_05625888
gene name FLOT1, FLOT1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5618356 ~ 5626767 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000319_05618356_05625888.mRNA
TTTGGAAATGTTTTACACTTGCGGTCCCAATGAGGCAATGGTGGTGTCGGGTTTCTGCCGCTCTCCACCGCTCATGATATCTGGTGGGAGAGTGTTTGTTATCCCGTGCATTCAGCAGATTCAAAGGATCTCTCTGAACACTCTGACGCTAAATGTAAAGAGTGATAAAGTCTACACACGTCATGGAGTGCCAATCTCTGTCACTGGGATTGCACAGATGAAGATTCAAGGGCAGAATAAGCAGATGTTGGCTGCAGCGTGTCAGATGTTCATGGGAAAGTCGGAGGGTGAGATTGCTCACATTGCCTTGGAAACGCTGGAGGGCCACCAGAGAGCCATCATTGCTCACCTGACCGTGGAGGAGATCTACAAAGACCGCAAGAAGTTCTCCGAGCAGGTGTTCAAGGTGGCTTCATCCGACCTTGTCAACATGGGCATCAGTGTGGTCAGCTACACACTCAAAGATGTTCACGATGACCAGGATTACCTGCACTCTTTAGGAAAGGCCCGTACGGCACAAGTGCAGAAGGATGCACGTATCGGGGAAGCCATGAACAAAAGAGATGCAGTAATCAGGGAGGCCCATGCTATGCAGGAGAAGATATCTGCTCAGTACATGAACGAGATCGAGATGGCTAAGGCTCAGAGAGACTACGAGCTAAAGAAGGCTGTCTACGACATTGAGGTCTTCACCAAAAAAGCTGAGTCTGAAATGGCCTATCAGCTCCAGGTGGCAAAGACGAAGCAGCGAATCGAGGAGGAGAAGATGCAGGTGCTAGTGGTGGAGCGCTCGCAACAAATCACACTGCAGGAACAGGAGATCACACGCAAGGAGAAAGAGCTGGAGGCCAAAGTCAAGAAACCAGCCGATGCTGAGCGATACCGGCTGGAGAAACTGGCAGAAGCCGAGCGTCTTCAGCTAATCATGGAGGCTGAAGCTGAGGCCGAATCCATCAGAGTAAGTGATCGGCCAACTCTAATAAGACCTATTTTTAAAACGAAACTGTTTGTGTTATACGTTATCTGTGTCTCTAAACTTCACAAAGCAGATACTGTGTTTGGTTCTGAGTTAAGATGTGAGCTAAATGTTACCTCACACACTTACTCTGATCAGGTGAGAGGAGAGGCCGAAGCGTACGCTGTGGAGGCTAAAGGTCGGGCCGAGGCCGAGCAGATGGCGAAGAAGGCTGAGGCCTTCCAGCAGTACAAAGAAGGAGCTATGGTGGACATGCTGCTGGAGAAACTGCCACTGGTGGCAGAGGAAATCAGTAAGCCTCTGTCAGCTGCCAATAAAGTCACCATGGTTTCCAGTGGAGGTTCAGAGGTTGGCGCAGCCAAGCTGACAGGTGAAGTGCTTGACATCATGACCAAACTGCCTGAAACCATCGAGAAACTGACTGGCATCAGTATTTCCCAGGTGGCCCGAACCGGTTGAACCCATTCTCCAACGTGACATTGCTGTATGCATGCTTTATGGATCTTTCCTTTTGTAATTTTCTCTTACTCTCACTTTTCCATCACACTCTCCTCTTTCTATAACAATGCATTGCTCCTTTTATCTTTCTTGTCTTCCACACTGCATCTCTTTTTATTCTCTTTCCCATGTTTCTCTCTCTCTCAAGTCTCTACTCACACTTCCTGTCTGTCTTGCCTTGCTGCCAAAACCCAAAGTGCATTTTAATCTAAAACTCCAGGGAAGAATGCTGTTCTTTATATTTTTAATGCAATCATCATAAGAATACAGTGAAGTCCAAGGATCTGTTGAACGCCATTAGACACTGCAGCTTCTGACATTTTGAAATGTTACATTCACCTTTAGTTTTTCGTATAGAGCACGCTGGTATGTGCACTAAGAGCATTTCGTTATACTTGAGCTTTCCAATAGTTAGTCAAACATGAAGGGAAACATATTTATAATGACTGATGCTGTTTTGTCATGTGTTTTTGTGGGTTGAATAGGATATACTTTCACTTTACCTCAGCAATGTGTTTTAGCTATATCTGACATAATGTAGGAATTATAGCAGTTATCTGCTTCAAATGGTACTGTGCTGCGAAATCTGAACATACTGCCAATAATGTCAGACCATCATTACCTGTGTTTCAGTGTTTATTCAAATGAACAAATGTCTTTATATGTAATGCACAAGTGTAGGTCAGTAAATATTCTATTAGTAACTTATTTATTTCACAAATATCATTTGAAGGATTTTTGTATAGTTTGAAGTGTTTTCATTGCTTGAATCAAGGGTACGATTATAGATATAATCTACATTTGTACTGTTTTGTCCTGAAGCAGACCATGTTGTGTTCA

Function

symbol description
flot1a Predicted to be involved in several processes, including positive regulation of cell-cell adhesion mediated by cadherin; protein kinase C signaling; and regulation of endocytosis. Predicted to be located in endosome and membrane. Predicted to be part of flotillin complex. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human FLOT1 (flotillin 1).
flot1 Enables protease binding activity. Involved in several processes, including positive regulation of cell-cell adhesion; positive regulation of cellular component organization; and protein localization to membrane. Located in several cellular components, including basolateral plasma membrane; centriolar satellite; and uropod. Part of flotillin complex. Is active in dopaminergic synapse. Colocalizes with COP9 signalosome and cortical actin cytoskeleton.

GO: NA

KEGG:

id description
K07192 FLOT; flotillin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000319_05618356_05625888.mRNA True 2314 mRNA 0.44 11 5618356 5626767

Neighbor

gene id symbol gene type direction distance location
CI01000319_05435510_05450379 NA coding upstream 167724 5435229 ~ 5450632 (+)
CI01000319_05112104_05116909 NA coding upstream 501282 5111633 ~ 5117074 (+)
CI01000319_04949418_04952350 PDK2B coding upstream 666006 4949305 ~ 4952350 (+)
CI01000319_04931863_04933044 NA coding upstream 685270 4931653 ~ 4933086 (+)
CI01000319_04907275_04915465 WIPF2B coding upstream 702760 4907006 ~ 4915596 (+)
CI01000319_05651284_05669061 KIFC1, ZBTB22B coding downstream 24347 5651114 ~ 5671460 (+)
CI01000319_05684798_05685353 NA coding downstream 57649 5684416 ~ 5685353 (+)
CI01000319_05704764_05712826 NA coding downstream 77316 5704083 ~ 5713885 (+)
CI01000319_05718732_05734284 NA coding downstream 91565 5718332 ~ 5734843 (+)
CI01000319_05742834_05745945 NA coding downstream 114564 5741331 ~ 5746141 (+)
G452805 NA non-coding upstream 29461 5586786 ~ 5588895 (+)
G452804 NA non-coding upstream 35795 5582351 ~ 5582561 (+)
G452690 NA non-coding upstream 56312 5561770 ~ 5562044 (+)
G452712 NA non-coding upstream 76682 5541467 ~ 5541674 (+)
G452711 NA non-coding upstream 77521 5540455 ~ 5540835 (+)
G452769 NA non-coding downstream 48661 5675428 ~ 5678025 (+)
G452735 NA non-coding downstream 84126 5712686 ~ 5712732 (+)
G452820 NA non-coding downstream 112326 5739093 ~ 5739474 (+)
CI01000319_05796587_05803719 ABCB3L2 non-coding downstream 120037 5793688 ~ 5804150 (+)
G452821 NA non-coding downstream 123073 5749840 ~ 5750457 (+)
G452543 NA other upstream 246872 5359700 ~ 5371484 (+)
G452545 NA other upstream 262321 5353694 ~ 5356035 (+)
G452541 NA other upstream 271362 5336085 ~ 5353023 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other upstream 827827 4787040 ~ 4790529 (+)
CI01000319_04515268_04534770 NA other upstream 1082331 4515268 ~ 4536025 (+)
G452884 NA other downstream 495877 6122644 ~ 6124939 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013820 flot1a coding NC_007130.7 CM002903.2 6938289 ~ 6957404 (+)