XLOC_013045 (fam118b)


Basic Information

Item Value
gene id XLOC_013045
gene name fam118b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 44795711 ~ 44820746 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025930
AAATGTAAAGTGTTGGCTTTTGTCCAGAGTGCGACTGACCGTCTGTCTGGCGGATTAAACTTTCACATCccgcagacacacacatgcacgcgcgCGGGGGTGCGCACATCCGCTGTGATGCGCAGCGCGGACACGTGTAAAAAGCTTCAGCTTGTGTACAGAAGGATCCGCAAAGGCGAGTCTCTGGACAGGTAGTTCTCTAAAGGCTGTCCTGATTTATTGAAGGCCTTTAGCGGTTTTATAGTTTCTTATTGGACACTGACTGGTACTGATACCATACTGGCATTAAGATCAAACCACTAAACGCGTGTTTGATGAAGTTTGTCCTTTGTTGCTCTGCTTTATCATTGATAACGCTTTGAATTATATAACAAAGCACTCGGATCTTCATTTCCTCGGTTCATCTGGGAGTCGAATGGCCTCTGTTGTCACCGTGAAGACAGAGAAGCGTCCTTCCCCTGACTCCGAGGATGGAGACACAATGGCTAAGAAGGCCAGGAAGTTGTTGCCCAGCCTGAAGACCAAGCGAGCTCCTGAGCTGGTTTTGGTGATCGGCACAGGTGTGAGTTCAGCCGTAGCTCCTCAGGTGCCAGCGCTGCGCTCATGGAAAGGTCTGATCCAGGCGCTGCTAGATGCTGCCAATGATTTTGATCTGCTTGAGGAGGAAGAGAGCCGGCGCTTCCAGAAAAGTCTGCAAGAGGACAAGAACCTGGTGCACGTTGCGCATGACCTTATTCAGAAACTTTCACCTCGGACAGGAAATGTACGCTCCACCTTTTTTAAAGACTGCCTGTACGAGGTGTTTGATGACCTGGAGTGTAAGATGGAGAACGCCGGGAAGCATCTCCTCCGCTCGGTGCTGCAGCTGATGGAGAGCGGTGCGCTGGTGCTCACCACCAACTTTGACAACCTGTTAGAGATCTACGCCGCCCACCAAGGAACCAAGCTGGAGTCTCTGGATCTCACAGATGAGAAGAAGgttctGGAATGGGCTCAGGAGAAAAGAAGACTGAGTGTACTCCATATTCACGGCGTCTACACCAACCCTAGTGGTATCGTACTGCATCCTGCTGGCTACCAGAACGTTCTGAGGAACACAGAAGTCATGagggAGATCCAGAAACTCTATGAAACAAAGTCTTTTGTGTTCCTGGGCTGTGGGAGGACGGTGGACGACACCACATTCCAGGCGCTGTTTCTCGAAGCGGTCAAACACAAGTCTGACCTTGAGCACTTCATGCTGGTGAGGCGGGAGGATGTGGGCGAGTTCAAAAAGCTCCGAGATAACATGCTGGACAAGGGAATTAAGGTCATCTCGTATGGCAATGAATACGCTGACCTGCCCGAGTACTTCGAACGGCTGGCCAATGAGATTTGCAACCGGGACGTAGAGCGGGACATGGTGACCAATGGCTGGGGATCTCCCATCTCACCAGGAGAAGAAAGTCACAACGGCTTCACGACCCAGAAAAACCTCCTACAAGTGCCTGCTTCTAGAACAATAGAAACATAGAG
>TCONS_00025931
AAATGTAAAGTGTTGGCTTTTGTCCAGAGTGCGACTGACCGTCTGTCTGGCGGATTAAACTTTCACATCccgcagacacacacatgcacgcgcgCGGGGGTGCGCACATCCGCTGTGATGCGCAGCGCGGACACGTGTAAAAAGCTTCAGCTTGTGTACAGAAGGATCCGCAAAGGCGAGTCTCTGGACAGGTAGTTCTCTAAAGGCTGTCCTGATTTATTGAAGGCCTTTAGCGGTTTTATAGTTTCTTATTGGACACTGACTGGTACTGATACCATACTGGCATTAAGATCAAACCACTAAACGCGTGTTTGATGAAGTTTGTCCTTTGTTGCTCTGCTTTATCATTGATAACGCTTTGAATTATATAACAAAGCACTCGGATCTTCATTTCCTCGGTTCATCTGGGAGTCGAATGGCCTCTGTTGTCACCGTGAAGACAGAGAAGCGTCCTTCCCCTGACTCCGAGGATGGAGACACAATGGCTAAGAAGGCCAGGAAGTTGTTGCCCAGCCTGAAGACCAAGCGAGCTCCTGAGCTGGTTTTGGTGATCGGCACAGGTGTGAGTTCAGCCGTAGCTCCTCAGGTGCCAGCGCTGCGCTCATGGAAAGGTCTGATCCAGGCGCTGCTAGATGCTGCCAATGATTTTGATCTGCTTGAGGAGGAAGAGAGCCGGCGCTTCCAGAAAAGTCTGCAAGAGGACAAGAACCTGGTGCACGTTGCGCATGACCTTATTCAGAAACTTTCACCTCGGACAGGAAATGTACGCTCCACCTTTTTTAAAGACTGCCTGTACGAGGTGTTTGATGACCTGGAGTGTAAGATGGAGAACGCCGGGAAGCATCTCCTCCGCTCGGTGCTGCAGCTGATGGAGAGCGGTGCGCTGGTGCTCACCACCAACTTTGACAACCTGTTAGAGATCTACGCCGCCCACCAAGGAACCAAGCTGGAGTCTCTGGATCTCACAGATGAGAAGAAGgttctGGAATGGGCTCAGGAGAAAAGAAGACTGAGTGTACTCCATATTCACGGCGTCTACACCAACCCTAGTGGTATCGTACTGCATCCTGCTGGCTACCAGAACGTTCTGAGGAACACAGAAGTCATGagggAGATCCAGAAACTCTATGAAACAAAGTCTTTTGTGTTCCTGGGCTGTGGGAGGACGGTGGACGACACCACATTCCAGGCGCTGTTTCTCGAAGCGGTCAAACACAAGTCTGACCTTGAGCACTTCATGCTGGTGAGGCGGGAGGATGTGGGCGAGTTCAAAAAGCTCCGAGATAACATGCTGGACAAGGGAATTAAGGTCATCTCGTATGGCAATGAATACGCTGACCTGCCCGAGTACTTCGAACGGCTGGCCAATGAGATTTGCAACCGGGACGTAGAGCGGGACATGGTGACCAATGGCTGGGGATCTCCCATCTCACCAGGAGAAGAAAGTCACAACGGCTTCACGACCCAGAAAAACCTCCTACAAGACTACCACTCGTGA
>TCONS_00025932
atgcacgcgcgCGGGGGTGCGCACATCCGCTGTGATGCGCAGCGCGGACACGTGTAAAAAGCTTCAGCTTGTGTACAGAAGGATCCGCAAAGGCGAGTCTCTGGACAGGTAGTTCTCTAAAGGCTGTCCTGATTTATTGAAGGCCTTTAGCGGTTTTATAGTTTCTTATTGGACACTGACTGGTACTGATACCATACTGGCATTAAGATCAAACCACTAAACGCGTGTTTGATGAAGTTTGTCCTTTGTTGCTCTGCTTTATCATTGATAACGCTTTGAATTATATAACAAAGCACTCGGATCTTCATTTCCTCGGTTCATCTGGGAGTCGAATGGCCTCTGTTGTCACCGTGAAGACAGAGAAGCGTCCTTCCCCTGACTCCGAGGATGGAGACACAATGGCTAAGAAGGCCAGGAAGTTGTTGCCCAGCCTGAAGACCAAGCGAGCTCCTGAGCTGGTTTTGGTGATCGGCACAGGTGTGAGTTCAGCCGTAGCTCCTCAGGTGCCAGCGCTGCGCTCATGGAAAGGTCTGATCCAGGCGCTGCTAGATGCTGCCAATGATTTTGATCTGCTTGAGGAGGAAGAGAGCCGGCGCTTCCAGAAAAGTCTGCAAGAGGACAAGAACCTGGTGCACGTTGCGCATGACCTTATTCAGAAACTTTCACCTCGGACAGGAAATGTACGCTCCACCTTTTTTAAAGACTGCCTGTACGAGGTGTTTGATGACCTGGAGTGTAAGATGGAGAACGCCGGGAAGCATCTCCTCCGCTCGGTGCTGCAGCTGATGGAGAGCGGTGCGCTGGTGCTCACCACCAACTTTGACAACCTGTTAGAGATCTACGCCGCCCACCAAGGAACCAAGCTGGAGTCTCTGGATCTCACAGATGAGAAGAAGgttctGGAATGGGCTCAGGAGAAAAGAAGACTGAGTGTACTCCATATTCACGGCGTCTACACCAACCCTAGTGGTATCGTACTGCATCCTGCTGGCTACCAGAACGTTCTGAGGAACACAGAAGTCATGagggAGATCCAGAAACTCTATGAAACAAAGTCTTTTGTGTTCCTGGGCTGTGGGAGGACGGTGGACGACACCACATTCCAGGCGCTGTTTCTCGAAGCGGTCAAACACAAGTCTGACCTTGAGCACTTCATGCTGGTGAGGCGGGAGGATGTGGGCGAGTTCAAAAAGCTCCGAGATAACATGCTGGACAAGGGAATTAAGGTCATCTCGTATGGCAATGAATACGCTGACCTGCCCGAGTACTTCGAACGGCTGGCCAATGAGATTTGCAACCGGGACGTAGAGCGGGACATGGTGACCAATGGCTGGGGATCTCCCATCTCACCAGGAGAAGAAAGTCACAACGGCTTCACGACCCAGAAAAACCTCCTACAAGGTTAGAACGGCTTTCATGTTGCATGCTAAAGGCCCTTGAATTTAGCATGACGACACTTTAAACtacttccttccttctttccttcagTGCCTGCTTCTAGAACAATAGAAACATAGAGGTGAATTC
>TCONS_00025933
CTCTGGACAGGTAGTTCTCTAAAGGCTGTCCTGATTTATTGAAGGCCTTTAGCGGTTTTATAGTTTCTTATTGGACACTGACTGGTACTGATACCATACTGGCATTAAGATCAAACCACTAAACGCGTGTTTGATGAAGTTTGTCCTTTGTTGCTCTGCTTTATCATTGATAACGCTTTGAATTATATAACAAAGCACTCGGATCTTCATTTCCTCGGTTCATCTGGGAGTCGAATGGCCTCTGTTGTCACCGTGAAGACAGAGAAGCGTCCTTCCCCTGACTCCGAGGATGGAGACACAATGGCTAAGAAGGCCAGGAAGTTGTTGCCCAGCCTGAAGACCAAGCGAGCTCCTGAGCTGGTTTTGGTGATCGGCACAGGTGTGAGTTCAGCCGTAGCTCCTCAGGTGCCAGCGCTGCGCTCATGGAAAGGTCTGATCCAGGCGCTGCTAGATGCTGCCAATGATTTTGATCTGCTTGAGGAGGAAGAGAGCCGGCGCTTCCAGAAAAGTCTGCAAGAGGACAAGAACCTGGTGCACGTTGCGCATGACCTTATTCAGAAACTTTCACCTGtaagatttgttttttcttttcttcctagAAAATCAAACTCTTTTATTATGGTTTGAAATGTTGATGGTACAttagcatagatatatacactagatatcgcataggaaccctgagcatgtgtcaa
>TCONS_00025934
AAGGTCATCTCGTATGGCAATGAATACGCTGACCTGCCCGAGTACTTCGAACGGCTGGCCAATGAGATTTGCAACCGGGACGTAGAGCGGGACATGGTGACCAATGGCTGGGGATCTCCCATCTCACCAGGAGAAGAAAGTCACAACGGCTTCACGACCCAGAAAAACCTCCTACAAGTGCCTGCTTCTAGAACAATAGAAACATAGAGACTACCACTCGTGACACAAGTGTTAGTCTGGGACGTCCCACAGCTCCGTCGCCCCCTTCCGCTCGGGTCTGGTTCGACTACGCACAACAAGACTCTTTCCTCATGTTTTCTGAGCGCCGTGACAATCGGTTGGCGTCACGCGGGGGAAAGCGTCAGTAAAAACACCACTGTGAACTCCTTTCTGAAACGCTTTACTgtatgtgagtgagtgagggagggagattattattattgttattattttaaatcaggtATGTGAAGTGTGGACCAAGATGACGTACAGGGCAGGCCGGTCCCATCCTAAAACAGTTTGACCGGTCAAATGTGCTAGATAAATACTGTAACGAACTGAACTGGAGAGTTTTAGCAATGCAGTCTCACATTCTTCATATCATTAAACACACCAGCAATATCGTTTTAGTGATGAATTGATTAATAAATGTCCAGGTCGTGTTTCATTCCAACATTAAAGACAGAGAAAAAGGGAAGAAAGTATGAAGTGACAGCTCATGTTAGCAAGAATTCACCGTATTACTGGATTTTATTGTGcgattataattatatttaaaa

Function

symbol description
fam118b Predicted to act upstream of or within Cajal body organization. Predicted to be located in Cajal body. Orthologous to several human genes including FAM118B (family with sequence similarity 118 member B).

GO:

id name namespace
GO:0030576 Cajal body organization biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-6 Predicted to act upstream of or within Cajal body organization. Predicted to be located in Cajal body. Orthologous to several human genes including FAM118B (family with sequence similarity 118 member B).

Ensembl:

ensembl_id ENSDARG00000078983

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025930 False 1515 mRNA 0.51 8 44795711 44820068
TCONS_00025931 False 1498 mRNA 0.51 8 44795711 44820190
TCONS_00025932 False 1527 mRNA 0.50 7 44795794 44820076
TCONS_00025933 False 695 lncRNA 0.45 3 44795892 44801995
TCONS_00025934 True 779 processed_transcript 0.45 4 44815507 44820746

Neighbor

gene id symbol gene type direction distance location
XLOC_013044 ilvbl coding upstream 1696 44768829 ~ 44794015 (+)
XLOC_013043 si:dkey-224e22.2 coding upstream 30196 44746594 ~ 44765515 (+)
XLOC_013042 b3gnt2l coding upstream 86661 44703343 ~ 44709050 (+)
XLOC_013041 napab coding upstream 98896 44673990 ~ 44696815 (+)
XLOC_013040 bicra coding upstream 132467 44630415 ~ 44663244 (+)
XLOC_013046 arfgap2 coding downstream 29063 44849809 ~ 44874334 (+)
XLOC_013047 CR792424.1 coding downstream 114427 44935173 ~ 44980093 (+)
XLOC_013048 CR792424.2 coding downstream 230089 45050835 ~ 45050950 (+)
XLOC_013049 large2 coding downstream 293646 45114392 ~ 45264117 (+)
XLOC_013050 BX908385.1 coding downstream 438235 45258981 ~ 45259097 (+)
XLOC_013039 NA non-coding upstream 203094 44591207 ~ 44592617 (+)
XLOC_013036 BX908388.1 non-coding upstream 641440 44153674 ~ 44154271 (+)
XLOC_013035 BX908388.2 non-coding upstream 676449 44119137 ~ 44119262 (+)
XLOC_013033 NA non-coding upstream 755209 44028378 ~ 44040502 (+)
XLOC_013032 CR925719.1 non-coding upstream 789023 44006572 ~ 44006688 (+)
XLOC_013051 BX908385.2 non-coding downstream 493222 45313968 ~ 45326757 (+)
XLOC_013052 NA non-coding downstream 635916 45456662 ~ 45478424 (+)

Expression


Co-expression Network