CI01000319_05816948_05819499 (PSMB8F)


Basic Information

Item Value
gene id CI01000319_05816948_05819499
gene name PSMB8F
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5816825 ~ 5819499 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000319_05816948_05819499.mRNA
ATTTAAAAACAGACATTTTCGATTGAAGACGCACCCAGTAAAGTTAGCTTAAGTATCACTTTCATTTTCAGTTGATCTCGTTGTGACAGACTAGGCTAGTTCGTTAGCGATTCACTTTCAACTATGGCGCTTATGGACGTATGTTTGTCACCTGAGCTGAAACAATCATGTTCTTCTCCTAACGCTTGGCAATCTGAGCCGACCACCTGTGGTCCGAGTCATTACACGTTCGGACTGAACTGCAACGAACTGGCCGTCCCGACTGGAATGGACCCGGAGCAGTTTCTCGGGCCACTCACAGAGGGAGATTCGGACATAAAAATTGAATTCCTTCATGGCACTACCACGTTAGCTTTCAAATTTCAGCATGGAGTGATGGTGGCTGTGGACTCAAGAGCATCTGCAGGGTCTTACATAGACACAAAGACATTCAACAAGGTAATCGAGATCAACCCGTATCTCCTTGGGACAATGTCTGGCAATGCAGCAGACTGTGTATATTGGGAGAGAAGACTGGCCAAAGAGTGCAGGATTTACAAGCTTAGAAACAAGACACGAATTAGTGTGGCCGCAGCCTCCAAGCTTCTAGCCAACATGGTGGCTGAATATCGAGGCATGGGCCTCTCCATGGGCACTATGGTTTGTGGCTGGGACCAGAGAGGTCCAGGTCTATTTTATGTGAGCAGCAGTGGCACAAGGTTAGCAGGAGATATGTTCTCCACAGGCTCGGGGTCTAACTATGCCTATGGTGTAATGGACTCAGGGCATAGGTGGGACCTGAGTGTACCCGAGGCCTACGACTTGGCAGAGAGAGCCATTTATCATGCCACACACCGTGATGCCTATTCTGGAGGGGTGGTCAACA

Function

symbol description
psmb8f Predicted to enable threonine-type endopeptidase activity. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome core complex.

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K02740 PSMB8, LMP7; 20S proteasome subunit beta 8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000319_05816948_05819499.mRNA True 865 mRNA 0.49 5 5816825 5819499

Neighbor

gene id symbol gene type direction distance location
CI01000319_05812788_05816097 NA coding upstream 654 5812693 ~ 5816171 (+)
CI01000319_05796587_05803719 ABCB3L2 coding upstream 12675 5793688 ~ 5804150 (+)
CI01000319_05742834_05745945 NA coding upstream 70684 5741331 ~ 5746141 (+)
CI01000319_05718732_05734284 NA coding upstream 81982 5718332 ~ 5734843 (+)
CI01000319_05704764_05712826 NA coding upstream 103734 5704083 ~ 5713885 (+)
CI01000319_05828294_05834113 NA coding downstream 8508 5828007 ~ 5835085 (+)
CI01000319_05872448_05880610 BRD2A, BRD2 coding downstream 52451 5871950 ~ 5880610 (+)
CI01000319_05882023_05885700 NA coding downstream 62524 5882023 ~ 5885805 (+)
CI01000319_05887712_05890105 HSD17B8 coding downstream 68019 5887518 ~ 5890794 (+)
CI01000319_05974099_05976045 CCDC127B coding downstream 154600 5974099 ~ 5976055 (+)
G452748 NA non-coding upstream 63866 5751718 ~ 5752959 (+)
G452821 NA non-coding upstream 66368 5749840 ~ 5750457 (+)
G452820 NA non-coding upstream 77351 5739093 ~ 5739474 (+)
G452735 NA non-coding upstream 83889 5712686 ~ 5712732 (+)
G452825 NA non-coding downstream 35456 5854955 ~ 5855198 (+)
G452826 NA non-coding downstream 36906 5856405 ~ 5856609 (+)
G452798 NA non-coding downstream 128042 5947541 ~ 5951211 (+)
G452784 NA non-coding downstream 147391 5966890 ~ 5967329 (+)
G452856 NA non-coding downstream 166209 5985708 ~ 5986065 (+)
G452543 NA other upstream 445341 5359700 ~ 5371484 (+)
G452545 NA other upstream 460790 5353694 ~ 5356035 (+)
G452541 NA other upstream 469831 5336085 ~ 5353023 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other upstream 1026296 4787040 ~ 4790529 (+)
G452884 NA other downstream 303145 6122644 ~ 6124939 (+)

Expression


Co-expression Network