CI01000319_05872448_05880610 (BRD2A, BRD2)


Basic Information

Item Value
gene id CI01000319_05872448_05880610
gene name BRD2A, BRD2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5871950 ~ 5880610 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000319_05872448_05880610.mRNA
CTATAAGAGAAACGGACAATTAGTCAGAGTTTGAGTCATGGCGAGTGTATTGTGATTATGTTGACGCGTCGTATTTAATTTCATTAAATCACAAAGTTGTTCGTCTTTCTGTCTCTACAGTTATAATTTGTCTGGGTATAAAACGATAATCCAATATTTGATATTATATTGCCCGGTTTCACAGACAAGGCTTAAGCCTAAAATGCATGTTTGAGCTCTTAACTGAAAGCAACTTGCACTAACATGTCTTAAAATATGTCAGTGCCATTGTTTTGTCTCAAGATGCACATCAGTAATGTTTTTTTTTTCTTTCTAAGTCATGTTTATGAAAGCTACATAAATGCCCTAATTTAACTAAGGCCTACTTTTGGTTTAATCTAAGCCCTGTCTGTGAAACCAAGCCAAAATGTTCTCATCTGGCTCTTCTCTACATGACCCCCTCATCTCCTTGTTCTCCACAGCTCTTTGGGCGGGGGCGACGGCATGCAGGGGCTCACGATGATGGAGCAGACCATCTCCGGACCCGGCAAGCGCATCCGCAAGCCGTCGCTGCTGTACGAAGGTTTTGAAGGACCTGCTCTGCCCCAGGTTCCCCAATCCGGACCCCCTCAACCCCCTGTACGGGACCCCACTCGACAGGGCCGCATGACCAACCAACTGCAGTTTCTCCAGAAGGCTTTACAGAAGACGCTGTGGAGGCATCACTTCGCCTGGCCTTTCCATGAGCCGGTGGACGCTGCCAAGCTCAACCTCCCTGATTATTATAACATCATTAAGCAGCCCATGGATATGGGGACCATCAAGAAAAGACTGGAGAACAATTATTACCGCAGTGCCAGCGAGTGCATGCAGGATTTCAACACCATGTTCACCAACTGCTACATCTACAACAAGCCAACAGATGACATTGTCCTGATGGCCCAGTCTCTGGAGAAGGCTTTCCTGCAGAAGGTTGCACAGATGCCCCAAGAGGAAGAAGAGATTCCCGCACCTGTCCCTAGGGGCAAACCGGGCAAACTTAAAAAAGGCCACAAATCAATTTCAGGTGGATTCACAACAGCTCATCAGGTCCCTGCTATATCTTCTGTATCCCAGTCGGCCTACTCCCCTCCCACTCCAGACACCCCAGACTCGAAAAAGGGCGTCAAGCGTAAGGCAGACACGACCACCCCCACCACCACGGGCATGCCCCTCACTATGGGTGTAGGTAGCATGGGTCTCGGCTTGGGCGGCGGTGACTCCCCGCTCACCATCTCTGCTTATAGTGCAGACCCCAAACAGAGTCTATCCCTTGGCCTGAACCTAGGTCTTGGTGGAGGCCTGGTTGGAGACAAAGTTCCGGCGAGACGAGGTGGCAGTGGCAGGCCCATCAAGCCACCACGGAAAGACTTGCCAGACTCCCAGAACCAACATCAGCCAGTGCGGCGTGGGAGGCTGAGCCAGCAGCTACGATACTGCAGCACTATTCTCAAGGAGCTGCTGTCGAAGAAGCACACAGCCTACGCCTGGCCCTTCTACAAGCCGGTGGATGTTTCCTTACTGGGACTGCATGACTATCACGATATTATCAAGTGTCCCATGGATCTAAGCACTATAAAGAGGAAAATGGACCATCGGGAGTACCGGGATGCATTGCAGTTTGCAGCTGACATCAGGCTAATGTTTTCAAACTGTTACAAGTACAATCCTCCAGATCACGATGTGGTGTCCATGGCCCGAAAATTACAGGATGTATTTGAGTTCCGCTTCGCCAAGATGCCTGACGAGCCCTTGGACTCCCTCCCACCTGCGTCCCTGGGCGGCGGCCTGGGCGACACCAAAGAGCAGGAGCAACAGCAAAGCGGCGACTTCCACTCAGGGCAAGAAGGGCTCCAATCCTCAAAGAAATCTCAAGCCGCATCATTTAACTCCATACCCATGAGCCACGGTGGTCTTACGCCACACTACGACTCAGAGGAAGAGGAGGAGACCAGCCCCATGAGCTACGACGAGAAGCGGCAGCTCAGCCTGGACATCAACAGGCTGCCGGGTGAGAAACTGGGCCGCGTGGTCCACATCATCCAATCACGAGAGCCCTCGCTGCGCGACACCAACCCAGAGGAGATCGAGATTGACTTTGAGACGCTCAAACCGTCCACGCTGCGGGAACTAGAGCGATATGTCATGATGTGTTTACGAAAGAAACCACGGAAACCTTATGTGGCAGTCAAAGGTGCTGCGGGTAAATCTCGTGAGGAGTTGGCTCTGGAGAAGAAGAGAGAGCTGGAGAGAAGACTGCAGGACGTCAGCGGCCAGCTCAACTCCGGCAAGAAACCACAGAAAACCAAAGCTCTTCTGTTTAGTATTGTGGCTGGTTTTTTCCACAGCTCATTCTGTTTTTTTAAGAAAACGACAACAACAAAACATAACGAAATGAAACCTCACGCTATAAGCATCATCTCCACAGATGCTTCATGCGACCGTAGTTCTCATCTGAAAAATGTCACATTAATAAAGAGG

Function

symbol description
brd2a Acts upstream of or within central nervous system development; regulation of apoptotic process; and thrombocyte differentiation. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in B-cell lymphoma; B-lymphoblastic leukemia/lymphoma; juvenile myoclonic epilepsy; and photosensitivity disease. Orthologous to human BRD2 (bromodomain containing 2).
brd2 Enables chromatin binding activity; lysine-acetylated histone binding activity; and protein serine/threonine kinase activity. Involved in nucleosome assembly; protein phosphorylation; and regulation of transcription by RNA polymerase II. Located in nuclear speck. Implicated in B-cell lymphoma; B-lymphoblastic leukemia/lymphoma; juvenile myoclonic epilepsy; and photosensitivity disease. Biomarker of melanoma.

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K08871 BRD2; bromodomain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000319_05872448_05880610.mRNA True 2499 mRNA 0.50 11 5871950 5880610

Neighbor

gene id symbol gene type direction distance location
CI01000319_05828294_05834113 NA coding upstream 36865 5828007 ~ 5835085 (+)
CI01000319_05816948_05819499 PSMB8F coding upstream 52451 5816825 ~ 5819499 (+)
CI01000319_05812788_05816097 NA coding upstream 55779 5812693 ~ 5816171 (+)
CI01000319_05796587_05803719 ABCB3L2 coding upstream 67800 5793688 ~ 5804150 (+)
CI01000319_05742834_05745945 NA coding upstream 125809 5741331 ~ 5746141 (+)
CI01000319_05882023_05885700 NA coding downstream 1413 5882023 ~ 5885805 (+)
CI01000319_05887712_05890105 HSD17B8 coding downstream 6908 5887518 ~ 5890794 (+)
CI01000319_05974099_05976045 CCDC127B coding downstream 93489 5974099 ~ 5976055 (+)
CI01000319_05978795_05979500 NA coding downstream 97585 5978195 ~ 5979549 (+)
CI01000319_05981549_05984687 NA coding downstream 100939 5981549 ~ 5985215 (+)
G452826 NA non-coding upstream 15341 5856405 ~ 5856609 (+)
G452825 NA non-coding upstream 16752 5854955 ~ 5855198 (+)
G452748 NA non-coding upstream 118991 5751718 ~ 5752959 (+)
G452821 NA non-coding upstream 121493 5749840 ~ 5750457 (+)
G452798 NA non-coding downstream 66931 5947541 ~ 5951211 (+)
G452784 NA non-coding downstream 86280 5966890 ~ 5967329 (+)
G452856 NA non-coding downstream 105098 5985708 ~ 5986065 (+)
G452880 NA non-coding downstream 170757 6051367 ~ 6051568 (+)
G452760 NA non-coding downstream 177939 6058549 ~ 6060505 (+)
G452735 NA other upstream 139014 5712686 ~ 5712732 (+)
G452543 NA other upstream 500466 5359700 ~ 5371484 (+)
G452545 NA other upstream 515915 5353694 ~ 5356035 (+)
G452541 NA other upstream 524956 5336085 ~ 5353023 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other upstream 1081421 4787040 ~ 4790529 (+)
G452884 NA other downstream 242034 6122644 ~ 6124939 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 misc CM030134.1 CM030134.1 393832 ~ 397899 (-)