CI01000319_05974099_05976045 (CCDC127B)


Basic Information

Item Value
gene id CI01000319_05974099_05976045
gene name CCDC127B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5974099 ~ 5976055 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000319_05974099_05976045.mRNA
ATGAGCCAAATCCTCAAATGCCCACTGATGGTTCGCTGCTTATTCAGTTATCGGTTCGGTCTGTTTCGTGAACGTGTCTGGTTTCTTGAACCGGACTGGAATATAAGGCCAGAGAGGCAGGGTGATGGTGGTGGCAGCAGTAAGTGGAACTATGCCCTCCTCGTGCCCATGCTGGGGCTCGCTGCCTTTCGATGGATCTGGTCCAAGGAGTCTCAAAAGGAAATCGAGGAGGCCAAGGTGAAGTATGAAAAGATTGTAAAGACAATCCAAAAGGACCTGGATGTGAAGTACAGACAGACGCTCTCTGAAAACAGCAGAGAAACAGCTCGGCTCGAGCTTGATCTAGAGAAAGAAAAGCAGCGGGCACATGGCTACCGTCAAGCCCTGGCATCACAGAGTCAGAAGCTCGAGGAGGAACGTCGAGGCATGAGGCTGGAACGTGAAGCTCTAGAAGACGAGAGATCTAGATTGCGTTACGGAGGACCTGGTGGCACCCTCTTCCACGAGGCATTGCAAAAGGAAAAAGAGCGAGAGATGAGGGCTTCGCTGGCTCTGAAGGAAGTAGAATACAAGCTGGTGGAAAGACAAAGGGCCTTTTGCAGTATTTTGGTGCCTCGTGCGAGGAGGGTGGAGATGGAGAAGGACCTTCTGGTTCAGACAGCCAAAAAGCCTCTTCTTGCACATCTGGAGATGGAGGACGGTCTCAGGGATATTTTTAAGAATGATCGCAGTTGTGCCGAGTATCTCAACACAGATGAGCGCAGGAATGGAAGTCTCATGTGGCTGTATCTCAGATACTGGCAGCTGCAGGTCACTCTTCAAACACACCAGAGAGCTGAAGCTGCTATACTTGGGATACAGCAGAAATGAATCTATATCA

Function

symbol description
ccdc127b Orthologous to human CCDC127 (coiled-coil domain containing 127).

NR:

description
Zgc:112105

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000319_05974099_05976045.mRNA True 880 mRNA 0.50 3 5974099 5976055

Neighbor

gene id symbol gene type direction distance location
CI01000319_05887712_05890105 HSD17B8 coding upstream 83305 5887518 ~ 5890794 (+)
CI01000319_05882023_05885700 NA coding upstream 88294 5882023 ~ 5885805 (+)
CI01000319_05872448_05880610 BRD2A, BRD2 coding upstream 93489 5871950 ~ 5880610 (+)
CI01000319_05828294_05834113 NA coding upstream 139014 5828007 ~ 5835085 (+)
CI01000319_05816948_05819499 PSMB8F coding upstream 154600 5816825 ~ 5819499 (+)
CI01000319_05978795_05979500 NA coding downstream 2140 5978195 ~ 5979549 (+)
CI01000319_05981549_05984687 NA coding downstream 5494 5981549 ~ 5985215 (+)
CI01000319_06031126_06031401 NA coding downstream 55071 6031126 ~ 6033230 (+)
CI01000319_06044073_06049600 NA coding downstream 68018 6044073 ~ 6049961 (+)
CI01000319_06054270_06057766 SF3B4 coding downstream 77792 6053847 ~ 6057899 (+)
G452784 NA non-coding upstream 6770 5966890 ~ 5967329 (+)
G452798 NA non-coding upstream 22888 5947541 ~ 5951211 (+)
G452826 NA non-coding upstream 117490 5856405 ~ 5856609 (+)
G452825 NA non-coding upstream 118901 5854955 ~ 5855198 (+)
CI01000319_05796587_05803719 ABCB3L2 non-coding upstream 170401 5793688 ~ 5804150 (+)
G452856 NA non-coding downstream 9653 5985708 ~ 5986065 (+)
G452880 NA non-coding downstream 75312 6051367 ~ 6051568 (+)
G452760 NA non-coding downstream 82494 6058549 ~ 6060505 (+)
G452881 NA non-coding downstream 86963 6063018 ~ 6064372 (+)
G452768 NA non-coding downstream 109784 6085839 ~ 6088623 (+)
G452735 NA other upstream 241163 5712686 ~ 5712732 (+)
G452543 NA other upstream 602615 5359700 ~ 5371484 (+)
G452545 NA other upstream 618064 5353694 ~ 5356035 (+)
G452541 NA other upstream 627105 5336085 ~ 5353023 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other upstream 1183570 4787040 ~ 4790529 (+)
G452884 NA other downstream 146589 6122644 ~ 6124939 (+)

Expression


Co-expression Network