CI01000319_06321729_06328918


Basic Information

Item Value
gene id CI01000319_06321729_06328918
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 6321729 ~ 6329654 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000319_06321729_06328918.mRNA
GACTTTCCATCGATATCACAATGGCTAGCCAAGATATGGAAATCATGTTTAAGGCGAAGCAAATAATGGAAAGAGTCACTGACAACTTAGTCCATACAATCATTATGCACAGAGACATCAATTCAAAGATAAATAAAATGAATAATATCAACAGGAAGAAGGCAACCATTGGGATTTTTGGAAAATCAGATGTTGTTACTGAGGTGGAAGCCAATCTGACTGACTCCAACTACATAGCAGAGAGAGAACTCTTCTCTAAAGAGAAAAAAATCACTGCGCTGTTTGGAGATGATGCAGATAAGAAAACATTAGAAGAGCTCAAGAATGATGCCAAATTTGCTGAGATTGAAACCCTTTTGTCTAACACTAAGAAAACAATCTCAAACACAGATGTTGAGACAAAAGTCAAAGTCTACAGGAAATTAGAGAAGAATCTAATGAAGGCACTAAATGAATTGGACAGTTGTTTTGACACCATTTATAATGATCTGGAGCAGTGTCTCTCAAAGGGAGTGGAAGAATCAGTGCAATTATGTGTTGATTCCACAAAAGCAATGATATCCCCCTGTGACTGGAACAACAGAGAAGTCAGTGCAAGAACAGACTGACAAGTTCAGTATCATCCAGAGTGACTCTGCTTACCCTGGATCTCCCATATTACAGCACATTCAGAACTTCATCAAAATAGAGGTGAGTTCAGTTGTCCTCTTGTGAGGACTCAGGGGCCTTAAATGATTAGTTCACTTTCAAATGAAAATTACACCAAGCTTTACTCACCCTCAAGCCATCCTAGGTGTATATGACTTCTTTCTGATGAACACAATCAGAGTTATATTAATAAATATCCTGATGCATCCAAGCTTTATAATGGCAGTGAGCGATACCAACGAGTATGAAACTGAAGAAAGTGCATCCATCCATCATAAATGTACTCCACATGGCTCTGGGAGGTGAATAAAAGCCTTCTGAAGCGAAGTGATGCGTTGCGTTTGTGTATGAAAAATATCCATATTTAACAAGGTATAAAGTCAAATATCTAGCTTCCGCAAGACCACCTATTCAACTTAGGATATTTATTAATATAACTTTGTGTTTGTGTAAGATTGTGTTCATCAGAAAGAAGAAAGTCATATACACTTAGGATGGTTTGAGGGTGAGTAAAGCTATGAACTAAAAAGTGAACTAATCCTTTATTGCGACCCTGGGTCTCTCTTTGTCTTTAATTTTGAAAGGAAACTAACCTGAAGGCATCGCTCAAAAGAGTCGTTGTTGATACAAAGAAGCACATCTACTCAGGAGTAGATTGAGAAGGAAACGTCTTCTTGCTATGATTGTGAGCTAGTA
>TU519985
CAGTGTCTCTCAAAGGGAGTGGAAGAATCAGTGCAATTATGTGTTGATTCCACAAAAGCAATGATATCCCCCTGTGACTGGAACAACAGAGAAGTCAGTGCAAGAACAGACTGACAAGTTCAGTATCATCCAGAGTGACTCTGCTTACCCTGGATCTCCCATATTACAGCACATTCAGAACTTCATCAAAATAGAGGAAACTAACCTGAAGGCATCGCTCAAAAGAGTCGTTGTTGATACAAAGAAGCACATCTACTCA

Function

NR:

description
hypothetical protein cypCar_00047857

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000319_06321729_06328918.mRNA False 1344 mRNA 0.38 6 6321729 6329654
TU519985 True 259 lncRNA 0.42 3 6328010 6329605

Neighbor

gene id symbol gene type direction distance location
CI01000319_06316911_06319511 CKS1B.L, BRAFLDRAFT_59154, CKS1, CKS1B, CKS1B.S, CKS2 coding upstream 2160 6316836 ~ 6319569 (+)
CI01000319_06299220_06303590 AQP10B coding upstream 17490 6299220 ~ 6304239 (+)
CI01000319_06289240_06294387 NA coding upstream 26926 6288877 ~ 6294803 (+)
CI01000319_06263395_06286919 UBAP2L coding upstream 34464 6263395 ~ 6287265 (+)
CI01000319_06248519_06260402 NA coding upstream 60801 6248054 ~ 6260928 (+)
CI01000319_06331800_06332394 NA coding downstream 2146 6331800 ~ 6332403 (+)
CI01000319_06373867_06384385 NA coding downstream 43830 6373484 ~ 6384471 (+)
CI01000319_06396614_06408857 NA coding downstream 66566 6396220 ~ 6409348 (+)
G452895 NA non-coding upstream 91781 6229616 ~ 6229948 (+)
G452782 NA non-coding upstream 203544 6116267 ~ 6118185 (+)
G452792 NA non-coding upstream 205640 6114501 ~ 6116089 (+)
G452768 NA non-coding upstream 233106 6085839 ~ 6088623 (+)
G453830 NA non-coding downstream 58774 6388428 ~ 6388654 (+)
G453837 NA non-coding downstream 86888 6416542 ~ 6416742 (+)
G452884 NA other upstream 196790 6122644 ~ 6124939 (+)
G452735 NA other upstream 588793 5712686 ~ 5712732 (+)
G452543 NA other upstream 950245 5359700 ~ 5371484 (+)
G452545 NA other upstream 965694 5353694 ~ 5356035 (+)
G452541 NA other upstream 974735 5336085 ~ 5353023 (+)

Expression


Co-expression Network