Gene
RNA
| Item | Value |
|---|---|
| gene id | G451357 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000319 |
| NCBI id | null |
| chromosome length | 6428943 |
| location | 2467916 ~ 2491293 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU518198 | False | 1104 | TUCP | 0.38 | 3 | 2467916 | 2491293 |
| TU518199 | False | 482 | TUCP | 0.44 | 2 | 2467916 | 2479019 |
| TU518203 | True | 482 | lncRNA | 0.44 | 2 | 2467916 | 2479019 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000319_02447968_02451102 | HGH1, BRP16 | coding | upstream | 16798 | 2447968 ~ 2451118 (+) |
| CI01000319_02446370_02446911 | HGH1 | coding | upstream | 21005 | 2446370 ~ 2446911 (+) |
| CI01000319_02427407_02432553 | NA | coding | upstream | 34922 | 2427407 ~ 2432994 (+) |
| CI01000319_02397660_02400937 | NA | coding | upstream | 66510 | 2397660 ~ 2401406 (+) |
| CI01000319_02344195_02381474 | NA | coding | upstream | 86442 | 2344195 ~ 2381474 (+) |
| CI01000319_02555778_02557068 | SCX, SCXA | coding | downstream | 76330 | 2555349 ~ 2557229 (+) |
| CI01000319_02589828_02606166 | HSF1 | coding | downstream | 110691 | 2589710 ~ 2606317 (+) |
| CI01000319_02680296_02690985 | CSK21, CSNK2A1 | coding | downstream | 201126 | 2680145 ~ 2692537 (+) |
| CI01000319_02701298_02702362 | NA | coding | downstream | 222159 | 2701178 ~ 2702479 (+) |
| CI01000319_02908622_02913138 | NA | coding | downstream | 429429 | 2908448 ~ 2913296 (+) |
| G451351 | NA | non-coding | upstream | 14241 | 2453223 ~ 2453675 (+) |
| G451348 | NA | non-coding | upstream | 24684 | 2440833 ~ 2443232 (+) |
| G451347 | NA | non-coding | upstream | 27834 | 2439871 ~ 2440082 (+) |
| G451098 | NA | non-coding | upstream | 78672 | 2388274 ~ 2389244 (+) |
| G451369 | NA | non-coding | downstream | 18066 | 2497085 ~ 2497296 (+) |
| G451370 | NA | non-coding | downstream | 18985 | 2498004 ~ 2498427 (+) |
| G451371 | NA | non-coding | downstream | 19821 | 2498840 ~ 2499103 (+) |
| G451380 | NA | non-coding | downstream | 32880 | 2511899 ~ 2512112 (+) |
| G451381 | NA | non-coding | downstream | 33137 | 2512156 ~ 2512391 (+) |
| CI01000319_02180899_02201030 | NA | other | upstream | 265771 | 2180899 ~ 2202145 (+) |
| CI01000319_01965186_01970285 | NA | other | upstream | 500737 | 1965166 ~ 1970322 (+) |
| G450270 | NA | other | upstream | 515148 | 1950818 ~ 1952768 (+) |
| G450208 | NA | other | upstream | 627055 | 1838061 ~ 1840861 (+) |
| G451367 | NA | other | downstream | 2045 | 2481064 ~ 2482421 (+) |
| G451485 | NA | other | downstream | 263722 | 2742741 ~ 2744523 (+) |
| G451500 | NA | other | downstream | 359067 | 2838086 ~ 2838949 (+) |
| G451677 | NA | other | downstream | 737321 | 3216340 ~ 3229331 (+) |
| G451662 | NA | other | downstream | 854262 | 3333281 ~ 3334824 (+) |
| CI01000319_03402932_03447997 | BTR26, BTR25, BTR24, BTY, BTR22, BTR18 | other | downstream | 911157 | 3402112 ~ 3448275 (+) |
