G451681


Basic Information

Item Value
gene id G451681
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 3170682 ~ 3218583 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU518616
CGCGCGTCCAGTTTTGCGTGAGAAGGGAATCCGCCTGTGAGCGGAGAGATTCCTGCTCGCGCATTTGATGCTCTCTCGACATTTGTTATTATAATAACGCCATAGAAACCGCCTAAATGAACTATTAACGTGAGAAGAAAGTCATGTCTGAATCTTGCAATCAATTTTTTATTGGTTAAAATGAATGGAGTAGCTATATCTTGTGTTTTTCCGTAGGTTTTCGACCATTTCCGTGGGTGGCGCCGAGCAAAATGAGTTTTGGCGTGCATATGATACGCAGTTTATGGCGTACAATAGGCACGAACCCCACACCACTAATCCTACCCAGGACTACCAAGCGTATTATATACATGCCAAAACTCATTTTGGCGTATATATTCTACGAGATTACACTCGCGTACTATTGATACGCATTCTCATGTGATCGGGTTGGTTTACCGACTTTGATGGGGCCCGCACTTTTTGCGCTGTCCACTCAGTTGTCATCAGCGGGAAAACCTCTCTCTACCATTGCGTTGGCTGGTTATTTTCACAGCTAGAACATGATGGCTGCACAAATAGATTTTTAAATGCCAGTCACAGTTTTTAATCATATTTGTGGTAGCCTATTTTAATTTCAAGGATGAAAAAAATATATCAGACATAACGGAAATGCTGGACACTTGGGACGCGGGACAAAGCTCCCAATTTCGGGACTGTCCCGCATTTGGTCACCCTATTCACAGATTTAGGAGGTAGTTTTAGCACTTAAATGCTTTGTGAAATGCTCTTAGAGCAAAAATTTAGGAGTCCTGAAATTAGGATTGACACGCCCATTATCTTTAAGAGTTTCTCCCAAATCGGCAAGTTAGGAGCTACTTAGCCTTAAGATGTTCTGTGAATATATGGCCCCAGATCACTTCCATTAGAAACCTGTTCAGCTCAATCTCTCTAATATTTCTCTCTCTTACCTGTGAGTATCAGATGTGTCCACAAGACTCTTTGAACGACTCAATAAATATTCTGTTGTTTGAAGAGGTTGATCGTTTCAGGCGTCCATATTGTTGTTGATCAAGTTACTTTCACTTTCTCTGAATCTCTCTGAACTACAGTGATGTCAGAGCTCCTCCTGTATTTACACATTTACATTTGTCTCTGTATTCAGTGTGTTGGTTCATGTGTGTCTGTTTGTATTGGGCCTGATGTTTCTATCAGGTCATGAAGAGATTTCAGCAGACTTACAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU518616 True 1226 lncRNA 0.41 3 3170682 3218583

Neighbor

gene id symbol gene type direction distance location
CI01000319_03139476_03152542 NEDD9 coding upstream 18112 3139373 ~ 3152570 (+)
CI01000319_03125942_03128108 NA coding upstream 42154 3125866 ~ 3128528 (+)
CI01000319_03067481_03071297 NA coding upstream 99335 3066768 ~ 3071477 (+)
CI01000319_03020934_03021218 NA coding upstream 149119 3020766 ~ 3021563 (+)
CI01000319_03011414_03016792 NA coding upstream 153487 3009565 ~ 3017195 (+)
CI01000319_03238023_03240147 NA coding downstream 19440 3238023 ~ 3240283 (+)
CI01000319_03283470_03293866 OSCP1A coding downstream 64848 3283431 ~ 3293926 (+)
CI01000319_03295425_03299640 LSM10 coding downstream 76842 3295425 ~ 3300676 (+)
CI01000319_03307678_03308097 NA coding downstream 87901 3306484 ~ 3308463 (+)
CI01000319_03389749_03391750 NA coding downstream 171166 3389749 ~ 3391991 (+)
G451655 NA non-coding upstream 8314 3114527 ~ 3162368 (+)
G451653 NA non-coding upstream 90915 3079555 ~ 3079767 (+)
G451652 NA non-coding upstream 91754 3078726 ~ 3078928 (+)
G451651 NA non-coding upstream 92125 3078271 ~ 3078557 (+)
G451663 NA non-coding downstream 76068 3294651 ~ 3329012 (+)
G451666 NA non-coding downstream 132156 3350739 ~ 3375767 (+)
G451741 NA non-coding downstream 157846 3376429 ~ 3376706 (+)
CI01000319_03394244_03396334 BTR26, BTR18, BTY, BTR25, BTR22 non-coding downstream 177506 3394244 ~ 3396614 (+)
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 non-coding downstream 185614 3402112 ~ 3448275 (+)
G451500 NA other upstream 331733 2838086 ~ 2838949 (+)
G451485 NA other upstream 426159 2742741 ~ 2744523 (+)
G451357 NA other upstream 679389 2467916 ~ 2491293 (+)
G451367 NA other upstream 688261 2481064 ~ 2482421 (+)
CI01000319_02344195_02381474 NA other upstream 791631 2344195 ~ 2381474 (+)
G451662 NA other downstream 114698 3333281 ~ 3334824 (+)
G452043 NA other downstream 280743 3500279 ~ 3500512 (+)
CI01000319_04515268_04534770 NA other downstream 1313036 4515268 ~ 4536025 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other downstream 1568457 4787040 ~ 4790529 (+)

Expression


Co-expression Network