G451667


Basic Information

Item Value
gene id G451667
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 3211189 ~ 3311940 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU518595
TTTTGTTTGTTTATTATGTGTAAAACAGAGGACGGCCTTTATTTGAAATTTACCATGGAGACTGAAAGCACTGAATTAACAGATTGTAAATGTTAAGAGAACGTCACAGCGTTACAGTATCATCACAAAGCAGGTTTCTAAAGAAAGCAGTTGAGTCCCCCAGTGTATCCTTACAACAACTGAACAGTGCAGTACAGAGATCAATGGAAGAAAAACCACATGATCTAAACATGCAGCATGAACTATTTTACATTTTGGTTGATAGTTTAAACACAATGCTGCAATAAATGCATCATTACAAGCTTAGTCTTGAATGTTCTATTATTATCTACACTTTAAAATCACATGAATGATCTAAAACTGACAAGATTTTTTTTGTTGTTCCTCAAAATAGAAAACAAGTCAATTTTTTTACACTTCACAAAGTAATTGGACTATTTTTTTAGTCATTAGTGGCATTTAAGGGAAGAAAATTAACTAAATTGGACGTTAAATATAGATGAGAACCCACTTGTCAGGACAATCTGATTCTGTACATTTTTTAACAGACAATTTTCTCGAGAAAATCGGCCCAGTACACAGTGTATTGGTCCGCAAGAGATATGCTCCAATAAGACTGAACCATACACCAATGACATTATAAAATAAAAGGGACGAAATATAAATGAATGAATTTACATGCAATTCCAAAACATAGAAAAGGGAAAATCTACTGGCAGAATCAAAATTAAAAGTTAAAAAAAAAAAAAAAAAAGGAATCATAAAACTACAGTTAAATCTAAGGCACAAGTGCATGGATTTTTTATTGCACTTTTTAAATGAAAAATGAATGACTGAATTTTTATTTTCAAATCACCCCCCCACAACTTCGAAAACAAGCGGAAAAAACACAAAAATTTGAAAACTGAAAAATAGTAGCAGATCATGTGATGCTATAAATGACATGGCTCTACCGTATGGGGCTTCACAGTCCAACACCTGAACACACGAGGATGCATTTCTCCCGAGGGCTCTCGCTGAGCTCGAGACAGTAGAGGAGAACAGACACAAATGGACGCGGATCCGTCTATGGCTTGGAAGCAGTGCTTTCCCCAGACTTTTCGTCGTCTTTGTGCTCTGCGCTGCCTTCTATCTCTCCCTCTTCAGCGTTGCCCTGGAACATGTCGTGGGTCCACTTGGGGCTGCCGCCACCCTTTCGAACAATGAAGGTGCCCCTGCCGCGGGGGTGAATCCCTCTGCCGCGCCCCCGAGTGTCCACCCACTTCATCTCCCCTTCCTTGTCCCGGTCGTCATGCTGCAGTTAGACGAGAGAGAAGGAAATTGAAACTCTCCTACTGGCCACCATGCAGCTTATTCAGTCCCAAAATTGCGCACTTATATAGGAAGGGACTGTCTGAGCGACATGCGAAGCAACCAACCAGCAGTTTTTGTTTTTAGCGTAAAGTTTAGGGGGGCGCGTGAATCTGAGATCAAAGCTAGGAATCACACCTGGAAGTACTTCCGACTCTTCGGGGTGTATTCGGGGTCCCACTCCTCCTCCGGGGGGCGTGAAGGGCCTCCCATATTTGGAGGGTTGTTATTGGTGTTGTTGCCAGGGTAATTTCCTCGGTTCCATCCTCTTCCTCTCATTCTGGGCTGCAAATACAAGAGAAGAGCAGATCAACTAAGAAGTCCAAGATATATGGGAGAACAACTTCAGGATCATTGTGCCACAAATACAAAAGCAGGTGGAATTACAGAATCCAGTTGTGAAAATGGAATTTACTG
>TU518594
ATTTTTTTTTTTTTATTATGTGTAAAACAGAGGACGGCCTTTATTTGAAATTTACCATGGAGACTGAAAGCACTGAATTAACAGATTGTAAATGTTAAGAGAACGTCACAGCGTTACAGTATCATCACAAAGCAGGTTTCTAAAGAAAGCAGTTGAGTCCCCCAGTGTATCCTTACAACAACTGAACAGTGCAGTACAGAGATCAATGGAAGAAAAACCACATGATCTAAACATGCAGCATGAACTATTTTACATTTTGGTTGATAGTTTAAACACAATGCTGCAATAAATGCATCATTACAAGCTTAGTCTTGAATGTTCTATTATTATCTACACTTTAAAATCACATGAATGATCTAAAACTGACAAGATTTTTTTTGTTGTTCCTCAAAATAGAAAACAAGTCAATTTTTTTACACTTCACAAAGTAATTGGACTATTTTTTTAGTCATTAGTGGCATTTAAGGGAAGAAAATTAACTAAATTGGACGTTAAATATAGATGAGAACCCACTTGTCAGGACAATCTGATTCTGTACATTTTTTAACAGACAATTTTCTCGAGAAAATCGGCCCAGTACACAGTGTATTGGTCCGCAAGAGATATGCTCCAATAAGACTGAACCATACACCAATGACATTATAAAATAAAAGGGACGAAATATAAATGAATGAATTTACATGCAATTCCAAAACATAGAAAAGGGAAAATCTACTGGCAGAATCAAAATTAAAAGTTAAAAAAAAAAAAAAAAAAGGAATCATAAAACTACAGTTAAATCTAAGGCACAAGTGCATGGATTTTTTATTGCACTTTTTAAATGAAAAATGAATGACTGAATTTTTATTTTCAAATCACCCCCCCACAACTTCGAAAACAAGCGGAAAAAACACAAAAATTTGAAAACTGAAAAATAGTAGCAGATCATGTGATGCTATAAATGACATGGCTCTACCGTATGGGGCTTCACAGTCCAACACCTGAACACACGAGGATGCATTTCTCCCGAGGGCTCTCGCTGAGCTCGAGACAGTAGAGGAGAACAGACACAAATGGACGCGGATCCGTCTATGGCTTGGAAGCAGTGCTTTCCCCAGACTTTTCGTCGTCTTTGTGCTCTGCGCTGCCTTCTATCTCTCCCTCTTCAGCGTTGCCCTGGAACATGTCGTGGGTCCACTTGGGGCTGCCGCCACCCTTTCGAACAATGAAGGTGCCCCTGCCGCGGGGGTGAATCCCTCTGCCGCGCCCCCGAGTGTCCACCCACTTCATCTCCCCTTCCTTGTCCCGGTCGTCATGCTGCAGTTAGACGAGAGAGAAGGAAATTGAAACTCTCCTACTGGCCACCATGCAGCTTATTCAGTCCCAAAATTGCGCACTTATATAGGAAGGGACTGTCTGAGCGACATGCGAAGCAACCAACCAGCAGTTTTTGTTTTTAGCGTAAAGTTTAGGGGGGCGCGTGAATCTGAGATCAAAGCTAGGAATCACACCTGGAAGTACTTCCGACTCTTCGGGGTGTATTCGGGGTCCCACTCCTCCTCCGGGGGGCGTGAAGGGCCTCCCATATTTGGAGGGTTGTTATTGGTGTTGTTGCCAGGGTAATTTCCTCGGTTCCATCCTCTTCCTCTCATTCTGGGCTGCAAATACAAGAGAAGAGCAGATCAACTAAGAAGTCCAAGATATATGGGAGAACAACTTCAGGATCATTGTGCCACAAATACAAAAGCAGGTGGAATTACAGAATCCAGTTGTGAAAATGGAATTTACTG
>TU518593
AAGACTTAAGACTTAGCCTACTTGTGACCTGCACATGTGTGACGTACTCCCACCTCTGGTGAATCCGTATGACGCAGTCCTCCGGTCCGAAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATGTGTAAAACAGAGGACGGCCTTTATTTGAAATTTACCATGGAGACTGAAAGCACTGAATTAACAGATTGTAAATGTTAAGAGAACGTCACAGCGTTACAGTATCATCACAAAGCAGGTTTCTAAAGAAAGCAGTTGAGTCCCCCAGTGTATCCTTACAACAACTGAACAGTGCAGTACAGAGATCAATGGAAGAAAAACCACATGATCTAAACATGCAGCATGAACTATTTTACATTTTGGTTGATAGTTTAAACACAATGCTGCAATAAATGCATCATTACAAGCTTAGTCTTGAATGTTCTATTATTATCTACACTTTAAAATCACATGAATGATCTAAAACTGACAAGATTTTTTTTGTTGTTCCTCAAAATAGAAAACAAGTCAATTTTTTTACACTTCACAAAGTAATTGGACTATTTTTTTAGTCATTAGTGGCATTTAAGGGAAGAAAATTAACTAAATTGGACGTTAAATATAGATGAGAACCCACTTGTCAGGACAATCTGATTCTGTACATTTTTTAACAGACAATTTTCTCGAGAAAATCGGCCCAGTACACAGTGTATTGGTCCGCAAGAGATATGCTCCAATAAGACTGAACCATACACCAATGACATTATAAAATAAAAGGGACGAAATATAAATGAATGAATTTACATGCAATTCCAAAACATAGAAAAGGGAAAATCTACTGGCAGAATCAAAATTAAAAGTTAAAAAAAAAAAAAAAAAAGGAATCATAAAACTACAGTTAAATCTAAGGCACAAGTGCATGGATTTTTTATTGCACTTTTTAAATGAAAAATGAATGACTGAATTTTTATTTTCAAATCACCCCCCCACAACTTCGAAAACAAGCGGAAAAAACACAAAAATTTGAAAACTGAAAAATAGTAGCAGATCATGTGATGCTATAAATGACATGGCTCTACCGTATGGGGCTTCACAGTCCAACACCTGAACACACGAGGATGCATTTCTCCCGAGGGCTCTCGCTGAGCTCGAGACAGTAGAGGAGAACAGACACAAATGGACGCGGATCCGTCTATGGCTTGGAAGCAGTGCTTTCCCCAGACTTTTCGTCGTCTTTGTGCTCTGCGCTGCCTTCTATCTCTCCCTCTTCAGCGTTGCCCTGGAACATGTCGTGGGTCCACTTGGGGCTGCCGCCACCCTTTCGAACAATGAAGGTGCCCCTGCCGCGGGGGTGAATCCCTCTGCCGCGCCCCCGAGTGTCCACCCACTTCATCTCCCCTTCCTTGTCCCGGTCGTCATGCTGCAGTTAGACGAGAGAGAAGGAAATTGAAACTCTCCTACTGGCCACCATGCAGCTTATTCAGTCCCAAAATTGCGCACTTATATAGGAAGGGACTGTCTGAGCGACATGCGAAGCAACCAACCAGCAGTTTTTGTTTTTAGCGTAAAGTTTAGGGGGGCGCGTGAATCTGAGATCAAAGCTAGGAATCACACCTGGAAGTACTTCCGACTCTTCGGGGTGTATTCGGGGTCCCACTCCTCCTCCGGGGGGCGTGAAGGGCCTCCCATATTTGGAGGGTTGTTATTGGTGTTGTTGCCAGGGTAATTTCCTCGGTTCCATCCTCTTCCTCTCATTCTGGGCTGCAAATACAAGAGAAGAGCAGATCAACTAAGAAGTCCAAGATATATGGGAGAACAACTTCAGGATCATTGTGCCACAAATACAAAAGCAGGTGGAATTACAGAATCCAGTTGTGAAAATGGAATTTACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU518595 False 1767 lncRNA 0.41 2 3211189 3311940
TU518594 False 1769 lncRNA 0.41 2 3214676 3311940
TU518593 True 1890 lncRNA 0.41 3 3214905 3311940

Neighbor

gene id symbol gene type direction distance location
CI01000319_03139476_03152542 NEDD9 coding upstream 58619 3139373 ~ 3152570 (+)
CI01000319_03125942_03128108 NA coding upstream 82661 3125866 ~ 3128528 (+)
CI01000319_03067481_03071297 NA coding upstream 139842 3066768 ~ 3071477 (+)
CI01000319_03020934_03021218 NA coding upstream 189626 3020766 ~ 3021563 (+)
CI01000319_03011414_03016792 NA coding upstream 193994 3009565 ~ 3017195 (+)
CI01000319_03389749_03391750 NA coding downstream 77809 3389749 ~ 3391991 (+)
CI01000319_03394244_03396334 BTR26, BTR18, BTY, BTR25, BTR22 coding downstream 82304 3394244 ~ 3396614 (+)
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 coding downstream 90172 3402112 ~ 3448275 (+)
CI01000319_03483504_03487172 NA coding downstream 169043 3480983 ~ 3488654 (+)
CI01000319_03500024_03502600 NA coding downstream 187332 3499272 ~ 3502830 (+)
G451690 NA non-coding upstream 4823 3189616 ~ 3206366 (+)
G451655 NA non-coding upstream 48821 3114527 ~ 3162368 (+)
G451653 NA non-coding upstream 131422 3079555 ~ 3079767 (+)
G451652 NA non-coding upstream 132261 3078726 ~ 3078928 (+)
G451651 NA non-coding upstream 132632 3078271 ~ 3078557 (+)
G451666 NA non-coding downstream 38799 3350739 ~ 3375767 (+)
G451741 NA non-coding downstream 64489 3376429 ~ 3376706 (+)
G452051 NA non-coding downstream 151556 3463496 ~ 3464355 (+)
G451500 NA other upstream 372240 2838086 ~ 2838949 (+)
G451485 NA other upstream 466666 2742741 ~ 2744523 (+)
G451357 NA other upstream 719896 2467916 ~ 2491293 (+)
G451367 NA other upstream 728768 2481064 ~ 2482421 (+)
CI01000319_02344195_02381474 NA other upstream 832138 2344195 ~ 2381474 (+)
G451662 NA other downstream 21341 3333281 ~ 3334824 (+)
G452043 NA other downstream 187386 3500279 ~ 3500512 (+)
CI01000319_04515268_04534770 NA other downstream 1219679 4515268 ~ 4536025 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other downstream 1475100 4787040 ~ 4790529 (+)

Expression


Co-expression Network