G452051


Basic Information

Item Value
gene id G452051
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 3463496 ~ 3464355 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU519031
GTTAGCTGCGTAGGGCCGTCCACGTCGCGTGGATGAATGCTGTGCTGCTTGCTTCTACCTCATCATTCGCAGATGTTGCTGCAGATTTGTTTTGGTTTTGTCTTTATTTTTCAGCTGCATGCTTGTGGAGTTCATAGACATGTTGGGTTTTTTAGTTAGTTGCATGCACAGTTTTAAACAGGTTCATTAGTTTATCTGACCATGATGGGGCTCCTTACAGATTTAACAGATAAACAAGAAACCCAGCGCGGATGACTCGGCCTAACGGATCCTCTCAGTTTCACTCTCAGACATTCACATAAACCTCTTCAGTCAGTCCTGATTCTCTCCGGTCCAGAACATTTGGATCTTCCCTAGTATTTCTCCACTCTTGTGTTTGCTTCTTTCCTGACCGTAGTGAAGCTCTCAAGTGATTTTTAGTCTCTGATGGATTCAGATCCTGTTATTGCATGATATGTATTTCAGACATGTTCCAGAACTGCTCATAATTCTGGAATCTTTTTATTTATGATGTTACATTGATGATGTATCAGTGGATCCAAACCTTTCCCTCCTGCTTTTGGATATCCATCACTTTTGTTTTGTTAAACTTGTGTAGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU519031 True 600 lncRNA 0.41 2 3463496 3464355

Neighbor

gene id symbol gene type direction distance location
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 coding upstream 15221 3402112 ~ 3448275 (+)
CI01000319_03394244_03396334 BTR26, BTR18, BTY, BTR25, BTR22 coding upstream 67006 3394244 ~ 3396614 (+)
CI01000319_03389749_03391750 NA coding upstream 71505 3389749 ~ 3391991 (+)
CI01000319_03307678_03308097 NA coding upstream 155033 3306484 ~ 3308463 (+)
CI01000319_03295425_03299640 LSM10 coding upstream 162820 3295425 ~ 3300676 (+)
CI01000319_03483504_03487172 NA coding downstream 16628 3480983 ~ 3488654 (+)
CI01000319_03500024_03502600 NA coding downstream 34917 3499272 ~ 3502830 (+)
CI01000319_03529404_03549529 NA coding downstream 63725 3528080 ~ 3549725 (+)
CI01000319_03582485_03652347 TRAPPC9 coding downstream 118130 3582485 ~ 3652447 (+)
CI01000319_03786208_03790365 NA coding downstream 321853 3786208 ~ 3791000 (+)
G451741 NA non-coding upstream 86790 3376429 ~ 3376706 (+)
G451666 NA non-coding upstream 87729 3350739 ~ 3375767 (+)
G451663 NA non-coding upstream 134484 3294651 ~ 3329012 (+)
G452053 NA non-coding downstream 41389 3505744 ~ 3506186 (+)
G452045 NA non-coding downstream 72195 3536550 ~ 3539369 (+)
G452107 NA non-coding downstream 212997 3677352 ~ 3678658 (+)
G452113 NA non-coding downstream 223787 3688142 ~ 3688369 (+)
G451662 NA other upstream 128672 3333281 ~ 3334824 (+)
G451677 NA other upstream 234165 3216340 ~ 3229331 (+)
G451500 NA other upstream 624547 2838086 ~ 2838949 (+)
G451485 NA other upstream 718973 2742741 ~ 2744523 (+)
G452043 NA other downstream 34971 3500279 ~ 3500512 (+)
CI01000319_04515268_04534770 NA other downstream 1067264 4515268 ~ 4536025 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other downstream 1322685 4787040 ~ 4790529 (+)
G452541 NA other downstream 1875167 5336085 ~ 5353023 (+)
G452545 NA other downstream 1889339 5353694 ~ 5356035 (+)

Expression


Co-expression Network