G452053


Basic Information

Item Value
gene id G452053
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 3505744 ~ 3506186 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU519033
GCCAAACTTCAGTTGCTTCACCATCGCCTCGATCATGAGAACCTTCAGGGAGGAAAACAGGACACAGAGACGATGGAATGGAAGAAGCCTGACTAGACATTTCAGTTGATGTGTGCCAGGGGTGGATCAGGCATGCAAGAGGATTTTACCCTGGATAGGGCCAGTACAGCCTGTGATGTTGATGAGATTCTCTGGCCTGTCCCAGACCAAAGATGTGATGCTGGGGCAGAATATTTTTTGTTGTTGTTTGGTGTATTGTACTGTACATTACATTAAGGAATAAAAAATGTGCAAATGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU519033 True 298 lncRNA 0.45 2 3505744 3506186

Neighbor

gene id symbol gene type direction distance location
CI01000319_03500024_03502600 NA coding upstream 2914 3499272 ~ 3502830 (+)
CI01000319_03483504_03487172 NA coding upstream 17090 3480983 ~ 3488654 (+)
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 coding upstream 57469 3402112 ~ 3448275 (+)
CI01000319_03394244_03396334 BTR26, BTR18, BTY, BTR25, BTR22 coding upstream 109254 3394244 ~ 3396614 (+)
CI01000319_03389749_03391750 NA coding upstream 113753 3389749 ~ 3391991 (+)
CI01000319_03529404_03549529 NA coding downstream 21894 3528080 ~ 3549725 (+)
CI01000319_03582485_03652347 TRAPPC9 coding downstream 76299 3582485 ~ 3652447 (+)
CI01000319_03786208_03790365 NA coding downstream 280022 3786208 ~ 3791000 (+)
CI01000319_03839724_03847827 KCNK9 coding downstream 333496 3839682 ~ 3848923 (+)
CI01000319_03873107_03926475 COL22A1 coding downstream 365400 3871586 ~ 3927089 (+)
G452051 NA non-coding upstream 41389 3463496 ~ 3464355 (+)
G451741 NA non-coding upstream 129038 3376429 ~ 3376706 (+)
G451666 NA non-coding upstream 129977 3350739 ~ 3375767 (+)
G452045 NA non-coding downstream 30364 3536550 ~ 3539369 (+)
G452107 NA non-coding downstream 171166 3677352 ~ 3678658 (+)
G452113 NA non-coding downstream 181956 3688142 ~ 3688369 (+)
G452209 NA non-coding downstream 762585 4268771 ~ 4269460 (+)
G451662 NA other upstream 170920 3333281 ~ 3334824 (+)
G451677 NA other upstream 276413 3216340 ~ 3229331 (+)
G451500 NA other upstream 666795 2838086 ~ 2838949 (+)
G451485 NA other upstream 761221 2742741 ~ 2744523 (+)
CI01000319_04515268_04534770 NA other downstream 1025433 4515268 ~ 4536025 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other downstream 1280854 4787040 ~ 4790529 (+)
G452541 NA other downstream 1833336 5336085 ~ 5353023 (+)
G452545 NA other downstream 1847508 5353694 ~ 5356035 (+)
G452543 NA other downstream 1853514 5359700 ~ 5371484 (+)

Expression


Co-expression Network