G452045


Basic Information

Item Value
gene id G452045
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 3536550 ~ 3539369 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU519025
ATATACTGTTACAGTACAGAAGGGTCGGAGACGACAGGAAACAGAGATGGAGATCGTGGATGGTAGCAGAGTGGCGTTGGAGTTTGAACAGAGAAGACACTTCGGAACTCACACGGACAGAGGAACACAGAAGGAGACTGGGAACACGCTGGAGAGAACTTGGAATCTTCTGGAGACAAGTGAGTAGGTATACGGGAGTCCTTAAGGTAAGTATAGAGGTAAGTCTATGTACAAACAAGACCGGACGATGAGTCTGTCTGTGTGTCTGTCTGTCTGTCTGTCTGTCGAACTGGTGGTGATTGCGGTGCTGATGAAGTGCAGGTGCGTGTGATCAGTACTCTGGTGAGGGAGTGCGCTGTGATTGGGTGATGTTAGAGCCTGGCGTGTCTGTGACAAATACAAGCTTAAATATATAAAGCTTTTAAAATGGCTAATGCTAATGTGTTTTCTTTTGAGCTCTTTCAGACCTTGTATACATTATTAAATCCAGCTAACTCACTTTCATTGATATAGTCAGATTTTCTTTCAGCTGCCCTCTAAAACTTTCACTGCTGCAGCAGTTTATTCCTGCCTTATAAATGACATCACACGCGACACATATAACACTGATAACAGCTGATAACAGCAGTCATTGTGAGAGAATGGCGGCCTCTACTGGAGACTTTTGGGAATTAAGTCTAATCTGTATATGTAATGCAAGACTAAACTATAGAGTGGAGTGGACTCAAAATGATTTGCATATTTACAATGTGTTTATTAATGTATGTCTCCAGAAGTGAGACAGTTTCGTCGGGATGCCCTCTGTCTTATTACAGTAGGCCTATGTCAATTCTCAAACATTACAAGATTCAGCAGGTTAAATCTGCAAAAACAAGCCCTGACCAATGACAACGGATGCAGACCGGATGAGAAACACACTGATCTGACAAAACCTGATGAACAAGTCTATTAGCGTTGGTGTGAATTGTGAAATATTATAAAATTTGTGAATTGTAAAACAAAAGCTCTGAGATCCGGCTGCACCAGCTGGACGTAAAGAAGTTGGTCTTTCACAGGTTTAGATGTACGTCCAGCCTTGTCATAAATATTTACACTTGTTTCACCTAAAAAAAACTATGGGTAGGTGCAGTTATGGCCAGCGTAGACGATTTGCATTTTACCACAGACATTGATCATTGAGATGCCATTCACACTTTCAGTATAAGAGGCTGTGACACTAGAGTCAGTTGTATAGAGCTAATGAAGAAAACAAGTTGAAGCTGAAGATGACACAAGTTTTTATTCATCAGAGGTTATCAGACACCAGTTATAAAGGTAACATTGCTTCCTAAAATAGTGGGTTATTAATAAATAGTAGGACCTGTTTACACTTGGTGTATGGAATAACCTACACAAATTTATGAAGCAAATTTTATTTTAAATGAGTAGCATCTCTTGCAGAGAATCTGAACCAGTCTTTAGTGGTGCAGACAGCTCCAAAAAAACACAACAACTGTACCTCCTCGAAGGACAAGAAATCTGTGTTACTGGAAAAAGAAATTATGAGAGTGGAGATGGAGAAAGAGTGGAAAATTAAAAGCTTGAGCTCAAGAAATGGAAACTTGAATTAGAAATCTGGTTATTAAAGAAAAAGGCCAGCTACACATTGAAAAACATTTCGTCAGGTTTATATTCAGTTTTTACTGACTTTTAGTTTGTTTTTCATTGTCCTCCTGTGTTTGAGCTCCTGCTTTTCCGCTCAGGGGTGCGTTTCCCAAAGCGAACTATGGTCGCAAGTTCCGTCGTTACCAATGGAGTTCAATGGGACTTACGACCATAGTTGACTAACGATGCTTTCGGGAAACACACCCCTGTTTAGTTTCCTTGGTTACTCATTATGCACTAGTGTGTTTCTATGGTTACCAACTGAGTTGTACCGACATGTCACTCGTATTGTTTTGAATGGGAGAAAGTGTAACGCGCAATATGGCGGAATAAGTCCCGCCTTCAAAATAAGAGCCAATCGCCGACTTGTAAAGTCATCGCGTCACTGCAGCGGCCGTTAGAAGCACCGGTTTCTATAGAAACAGTCAGACGCGCGCCTCCGAAATGAGGCACAAGAGACGCGCATTTAGGTCTGCGCATGCGCATTAGCTTGATCCAGCCTGAAAAATGCTTTTTTTTTTTTTGGCATGATTCGAGCGTTTAGAAACTAAATTTATGAGCCGGTTGTTGTTAGATTTCATTGGTGATTTCAAATATGAAATTTAATCGTACGGTTGGCGAACAGTTTTGGAGAATTTGATGTTTCCCCATTCAAAGAGATAGGAGCTGCATGATGCCCAGGATGCCCGAGAGGCGTTTCAAAGATGGCCGCCGAGTGAAATGACTTGTCGTTGTACACCTGTGTCTTGTTCAGTTATTCATTCTGTGTTTGGTACATCTTTTCATGTAAAGCTGTTATGTTGATTTTGTTGAATTACCATTTTTGTTTTCTTTGATAATTAGAGTATTTATTGCAAGATCCTCCTCTCCTTGTCTTTTCCAGAGTCAGATGTGACACATTTGATGTAGAAACAATTTTTACTCAGAAATTGCTATTAAATTTCACAATTAATTACAAAGAAATGGCAATTAACACATTGAATTAAACATTACATTTTGAAGTAAAAAGGCTGGAATAGTATTTTCTTATAAACTGTACTCCAATAATCTTTGTTTTTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU519025 True 2705 lncRNA 0.40 2 3536550 3539369

Neighbor

gene id symbol gene type direction distance location
CI01000319_03500024_03502600 NA coding upstream 33720 3499272 ~ 3502830 (+)
CI01000319_03483504_03487172 NA coding upstream 47896 3480983 ~ 3488654 (+)
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 coding upstream 88275 3402112 ~ 3448275 (+)
CI01000319_03394244_03396334 BTR26, BTR18, BTY, BTR25, BTR22 coding upstream 140060 3394244 ~ 3396614 (+)
CI01000319_03389749_03391750 NA coding upstream 144559 3389749 ~ 3391991 (+)
CI01000319_03582485_03652347 TRAPPC9 coding downstream 43116 3582485 ~ 3652447 (+)
CI01000319_03786208_03790365 NA coding downstream 246839 3786208 ~ 3791000 (+)
CI01000319_03839724_03847827 KCNK9 coding downstream 300313 3839682 ~ 3848923 (+)
CI01000319_03873107_03926475 COL22A1 coding downstream 332217 3871586 ~ 3927089 (+)
CI01000319_04002430_04030246 FAM135B coding downstream 463061 4002430 ~ 4030363 (+)
G452053 NA non-coding upstream 30364 3505744 ~ 3506186 (+)
G452051 NA non-coding upstream 72195 3463496 ~ 3464355 (+)
G451741 NA non-coding upstream 159844 3376429 ~ 3376706 (+)
G452107 NA non-coding downstream 137983 3677352 ~ 3678658 (+)
G452113 NA non-coding downstream 148773 3688142 ~ 3688369 (+)
G452209 NA non-coding downstream 729402 4268771 ~ 4269460 (+)
G452297 NA non-coding downstream 905198 4444567 ~ 4445315 (+)
G452298 NA non-coding downstream 906594 4445963 ~ 4446197 (+)
G451662 NA other upstream 201726 3333281 ~ 3334824 (+)
G451677 NA other upstream 307219 3216340 ~ 3229331 (+)
G451500 NA other upstream 697601 2838086 ~ 2838949 (+)
G451485 NA other upstream 792027 2742741 ~ 2744523 (+)
CI01000319_04515268_04534770 NA other downstream 992250 4515268 ~ 4536025 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other downstream 1247671 4787040 ~ 4790529 (+)
G452541 NA other downstream 1800153 5336085 ~ 5353023 (+)
G452545 NA other downstream 1814325 5353694 ~ 5356035 (+)
G452543 NA other downstream 1820331 5359700 ~ 5371484 (+)

Expression


Co-expression Network