G452299


Basic Information

Item Value
gene id G452299
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 4446491 ~ 4446725 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU519314
TCCACATCTCCCACATATGTGTGTTTTAGCAAGGCGGTCTGTGTTGCAAGTTGGTGAATGAAAATACTTGCCAGGTCACTACTCCGCTTTATTAATTTATCCAGTGTAAAACCTAGACACCACCACACAAATGTGGCTTTTTGTTTATGACTATCCTACTACAGGATTTAACACAGAGTAACAGCTCAATACCAGTTACAAAAGACACTGTAACAGTTTTTCACAGACAATTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU519314 True 235 lncRNA 0.39 1 4446491 4446725

Neighbor

gene id symbol gene type direction distance location
CI01000319_04424107_04437627 NA coding upstream 8644 4423822 ~ 4437847 (+)
CI01000319_04002430_04030246 FAM135B coding upstream 416128 4002430 ~ 4030363 (+)
CI01000319_03873107_03926475 COL22A1 coding upstream 519402 3871586 ~ 3927089 (+)
CI01000319_03839724_03847827 KCNK9 coding upstream 597568 3839682 ~ 3848923 (+)
CI01000319_03786208_03790365 NA coding upstream 655491 3786208 ~ 3791000 (+)
CI01000319_04478393_04509691 CDK12, CDK13 coding downstream 31668 4478393 ~ 4510337 (+)
CI01000319_04515268_04534770 NA coding downstream 68543 4515268 ~ 4536025 (+)
CI01000319_04536287_04545417 STARD3 coding downstream 89562 4536287 ~ 4546868 (+)
CI01000319_04550077_04553516 MREG coding downstream 102244 4548969 ~ 4555108 (+)
CI01000319_04581466_04584558 ENO2, ENOG coding downstream 134741 4581466 ~ 4584565 (+)
G452298 NA non-coding upstream 294 4445963 ~ 4446197 (+)
G452297 NA non-coding upstream 1176 4444567 ~ 4445315 (+)
G452209 NA non-coding upstream 177031 4268771 ~ 4269460 (+)
G452113 NA non-coding upstream 758122 3688142 ~ 3688369 (+)
G452107 NA non-coding upstream 767833 3677352 ~ 3678658 (+)
G452300 NA non-coding downstream 1064 4447789 ~ 4448033 (+)
G452267 NA non-coding downstream 2664 4449389 ~ 4452465 (+)
G452306 NA non-coding downstream 30370 4477095 ~ 4477333 (+)
G452277 NA non-coding downstream 69967 4516692 ~ 4518033 (+)
G452043 NA other upstream 901772 3500279 ~ 3500512 (+)
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 other upstream 1025891 3402112 ~ 3448275 (+)
G451662 NA other upstream 1111667 3333281 ~ 3334824 (+)
G451677 NA other upstream 1217160 3216340 ~ 3229331 (+)
G451500 NA other upstream 1607542 2838086 ~ 2838949 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other downstream 340315 4787040 ~ 4790529 (+)
G452541 NA other downstream 892797 5336085 ~ 5353023 (+)
G452545 NA other downstream 906969 5353694 ~ 5356035 (+)
G452543 NA other downstream 912975 5359700 ~ 5371484 (+)

Expression


Co-expression Network