Item | Value |
---|---|
gene id | G452257 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000319 |
NCBI id | null |
chromosome length | 6428943 |
location | 4561039 ~ 4561688 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU519267 | True | 447 | lncRNA | 0.47 | 3 | 4561039 | 4561688 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000319_04550077_04553516 | MREG | coding | upstream | 5931 | 4548969 ~ 4555108 (+) |
CI01000319_04536287_04545417 | STARD3 | coding | upstream | 14171 | 4536287 ~ 4546868 (+) |
CI01000319_04515268_04534770 | NA | coding | upstream | 26137 | 4515268 ~ 4536025 (+) |
CI01000319_04478393_04509691 | CDK12, CDK13 | coding | upstream | 50702 | 4478393 ~ 4510337 (+) |
CI01000319_04424107_04437627 | NA | coding | upstream | 123192 | 4423822 ~ 4437847 (+) |
CI01000319_04581466_04584558 | ENO2, ENOG | coding | downstream | 19778 | 4581466 ~ 4584565 (+) |
CI01000319_04626091_04632375 | ZNF646 | coding | downstream | 64072 | 4625760 ~ 4632569 (+) |
CI01000319_04697405_04706265 | NA | coding | downstream | 133475 | 4695163 ~ 4706544 (+) |
CI01000319_04714806_04715176 | NA | coding | downstream | 153118 | 4714806 ~ 4715569 (+) |
CI01000319_04716980_04720666 | NA | coding | downstream | 154753 | 4716441 ~ 4720672 (+) |
G452309 | NA | non-coding | upstream | 12218 | 4548607 ~ 4548821 (+) |
G452277 | NA | non-coding | upstream | 43006 | 4516692 ~ 4518033 (+) |
G452306 | NA | non-coding | upstream | 83706 | 4477095 ~ 4477333 (+) |
G452267 | NA | non-coding | upstream | 108574 | 4449389 ~ 4452465 (+) |
G452256 | NA | non-coding | downstream | 13684 | 4575372 ~ 4582676 (+) |
G452274 | NA | non-coding | downstream | 33981 | 4595669 ~ 4601541 (+) |
G452261 | NA | non-coding | downstream | 103432 | 4665120 ~ 4761324 (+) |
G452351 | NA | non-coding | downstream | 216222 | 4777910 ~ 4778144 (+) |
G452390 | NA | non-coding | downstream | 383265 | 4944953 ~ 4945452 (+) |
G452043 | NA | other | upstream | 1016320 | 3500279 ~ 3500512 (+) |
CI01000319_03402932_03447997 | BTR26, BTR25, BTR24, BTY, BTR22, BTR18 | other | upstream | 1140439 | 3402112 ~ 3448275 (+) |
G451662 | NA | other | upstream | 1226215 | 3333281 ~ 3334824 (+) |
G451677 | NA | other | upstream | 1331708 | 3216340 ~ 3229331 (+) |
CI01000319_04787066_04788609 | EIF1B, EIF1, GM6900 | other | downstream | 225352 | 4787040 ~ 4790529 (+) |
G452541 | NA | other | downstream | 777834 | 5336085 ~ 5353023 (+) |
G452545 | NA | other | downstream | 792006 | 5353694 ~ 5356035 (+) |
G452543 | NA | other | downstream | 798012 | 5359700 ~ 5371484 (+) |
G452735 | NA | other | downstream | 1146474 | 5712686 ~ 5712732 (+) |