G452257



Basic Information


Item Value
gene id G452257
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 4561039 ~ 4561688 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU519267
ACCCTCCATCTGCAATGTTGAACATGAACCGTGTTTTGGCTTTCTTCCTCTCTTCAGCTAGTGCTGCCGCTGCGCTGTCTTTGGCACTTTCTCCGTTCGGCAGTTTTCCCGCTTCCTCCGTCTTACCAGATTCCTTCTCATCCTTCTGACCTTTCTTCTCATCTGTAACAGGTGTAGTGTCCATCTTCTCAGGTTCGTCGTCCTTCTTTTCACCTTTGTTGTCTGAAGTTTCCTTCTCAGCCTCAGATCCTTTGGGCTTTGTGTCTTCGGTCTTCTCATCAGCATCTCCAGACTTCCCTTTCTCCTCTTCTTTCTCAACTTGATTCCCATCAGTCTTATCTGCCTCTGAAGAGGATTCAGACGTCTTGTCCTTGTCCTTCTCCTCTTTGTCTTTTCCTTTCTCTTCAGAAGCAGAGGAAGCTTCATCATCTTCATCCGGAATAGCAA

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU519267 True 447 lncRNA 0.47 3 4561039 4561688

Neighbor


gene id symbol gene type direction distance location
CI01000319_04550077_04553516 MREG coding upstream 5931 4548969 ~ 4555108 (+)
CI01000319_04536287_04545417 STARD3 coding upstream 14171 4536287 ~ 4546868 (+)
CI01000319_04515268_04534770 NA coding upstream 26137 4515268 ~ 4536025 (+)
CI01000319_04478393_04509691 CDK12, CDK13 coding upstream 50702 4478393 ~ 4510337 (+)
CI01000319_04424107_04437627 NA coding upstream 123192 4423822 ~ 4437847 (+)
CI01000319_04581466_04584558 ENO2, ENOG coding downstream 19778 4581466 ~ 4584565 (+)
CI01000319_04626091_04632375 ZNF646 coding downstream 64072 4625760 ~ 4632569 (+)
CI01000319_04697405_04706265 NA coding downstream 133475 4695163 ~ 4706544 (+)
CI01000319_04714806_04715176 NA coding downstream 153118 4714806 ~ 4715569 (+)
CI01000319_04716980_04720666 NA coding downstream 154753 4716441 ~ 4720672 (+)
G452309 NA non-coding upstream 12218 4548607 ~ 4548821 (+)
G452277 NA non-coding upstream 43006 4516692 ~ 4518033 (+)
G452306 NA non-coding upstream 83706 4477095 ~ 4477333 (+)
G452267 NA non-coding upstream 108574 4449389 ~ 4452465 (+)
G452256 NA non-coding downstream 13684 4575372 ~ 4582676 (+)
G452274 NA non-coding downstream 33981 4595669 ~ 4601541 (+)
G452261 NA non-coding downstream 103432 4665120 ~ 4761324 (+)
G452351 NA non-coding downstream 216222 4777910 ~ 4778144 (+)
G452390 NA non-coding downstream 383265 4944953 ~ 4945452 (+)
G452043 NA other upstream 1016320 3500279 ~ 3500512 (+)
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 other upstream 1140439 3402112 ~ 3448275 (+)
G451662 NA other upstream 1226215 3333281 ~ 3334824 (+)
G451677 NA other upstream 1331708 3216340 ~ 3229331 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other downstream 225352 4787040 ~ 4790529 (+)
G452541 NA other downstream 777834 5336085 ~ 5353023 (+)
G452545 NA other downstream 792006 5353694 ~ 5356035 (+)
G452543 NA other downstream 798012 5359700 ~ 5371484 (+)
G452735 NA other downstream 1146474 5712686 ~ 5712732 (+)

Expression



Co-expression Network