Gene
RNA
| Item | Value |
|---|---|
| gene id | G452256 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000319 |
| NCBI id | null |
| chromosome length | 6428943 |
| location | 4575372 ~ 4582676 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU519265 | False | 1109 | lncRNA | 0.49 | 6 | 4575372 | 4582676 |
| TU519266 | True | 936 | lncRNA | 0.51 | 5 | 4575372 | 4582098 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000319_04550077_04553516 | MREG | coding | upstream | 20264 | 4548969 ~ 4555108 (+) |
| CI01000319_04536287_04545417 | STARD3 | coding | upstream | 28504 | 4536287 ~ 4546868 (+) |
| CI01000319_04515268_04534770 | NA | coding | upstream | 40470 | 4515268 ~ 4536025 (+) |
| CI01000319_04478393_04509691 | CDK12, CDK13 | coding | upstream | 65035 | 4478393 ~ 4510337 (+) |
| CI01000319_04424107_04437627 | NA | coding | upstream | 137525 | 4423822 ~ 4437847 (+) |
| CI01000319_04626091_04632375 | ZNF646 | coding | downstream | 43084 | 4625760 ~ 4632569 (+) |
| CI01000319_04697405_04706265 | NA | coding | downstream | 112487 | 4695163 ~ 4706544 (+) |
| CI01000319_04714806_04715176 | NA | coding | downstream | 132130 | 4714806 ~ 4715569 (+) |
| CI01000319_04716980_04720666 | NA | coding | downstream | 133765 | 4716441 ~ 4720672 (+) |
| CI01000319_04741909_04748409 | NA | coding | downstream | 158304 | 4740980 ~ 4748943 (+) |
| G452257 | NA | non-coding | upstream | 13684 | 4561039 ~ 4561688 (+) |
| G452309 | NA | non-coding | upstream | 26551 | 4548607 ~ 4548821 (+) |
| G452277 | NA | non-coding | upstream | 57339 | 4516692 ~ 4518033 (+) |
| G452306 | NA | non-coding | upstream | 98039 | 4477095 ~ 4477333 (+) |
| G452274 | NA | non-coding | downstream | 12993 | 4595669 ~ 4601541 (+) |
| G452261 | NA | non-coding | downstream | 82444 | 4665120 ~ 4761324 (+) |
| G452351 | NA | non-coding | downstream | 195234 | 4777910 ~ 4778144 (+) |
| G452390 | NA | non-coding | downstream | 362277 | 4944953 ~ 4945452 (+) |
| G452427 | NA | non-coding | downstream | 476306 | 5058982 ~ 5059335 (+) |
| G452043 | NA | other | upstream | 1030653 | 3500279 ~ 3500512 (+) |
| CI01000319_03402932_03447997 | BTR26, BTR25, BTR24, BTY, BTR22, BTR18 | other | upstream | 1154772 | 3402112 ~ 3448275 (+) |
| G451662 | NA | other | upstream | 1240548 | 3333281 ~ 3334824 (+) |
| G451677 | NA | other | upstream | 1346041 | 3216340 ~ 3229331 (+) |
| CI01000319_04787066_04788609 | EIF1B, EIF1, GM6900 | other | downstream | 204364 | 4787040 ~ 4790529 (+) |
| G452541 | NA | other | downstream | 756846 | 5336085 ~ 5353023 (+) |
| G452545 | NA | other | downstream | 771018 | 5353694 ~ 5356035 (+) |
| G452543 | NA | other | downstream | 777024 | 5359700 ~ 5371484 (+) |
| G452735 | NA | other | downstream | 1125486 | 5712686 ~ 5712732 (+) |
