G452590


Basic Information

Item Value
gene id G452590
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5320045 ~ 5321004 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU519641
TAAAATGTATAACGTAAGTAAACTGCTCAAGCTATCTTTACATTTTTGGTATTGTGCCTCTTAGTCATTACTGCTTCCTCAGGGATACTCTATCTCGGACTGACACACAGACGGATAGTCCGGATCTTTCAAGCGGTCTAAATATCGTCTAAATATATATTAAAAGTGTTTTGTGGTCACTAAACACTTGGTTTAACAATTGCTTGTCTGAAAAATCGGTTAATCTAACAAGCAAATTGAGTACAGCACGTTTAGACATACGCTAGCAAATGTCGAACCGTTGGTTGAAACTGTAACTTTTTAAAATTCAAAACTCACTTGTTGTCGTAACTCATAACATTCCCTGGGTTTTGCATATCCCGCGCGAGACCAGGTGTGCGGCCGGTAAACGTCACAATGGCCTTGTGCGCGCCGCGATCCGGTTCCACTTTGGTTTCGCTTTTTAAACAAATCTCGAGTCAAAATTTTGTTCACTTTAGTACAAAAACTACTTGGCTCATTACAATCAATCGCGGTTGCTGGCTTTAAAACGGTTTACAAAGGTTTAACAGGAATATTTGGTTTCTCTATTTGGTTTCTAGCTCTCCTACTGTGTGGTTTATCTCGCGCACATTGCATGCATTTCAAGCAGCATATTATTATTATTTTTTGTATAAAATATAATATAATCGCTTAATATATTTAAGTAATCACGTACGTATAAGGCTACGCAGCGGCTCTACACGCTCCCCCTTCGTTTCCACTCACGAGCCAGTAATTAAAACGCAATCAATCGATAAATAAATGAATAAGCAACACTGCTTGCGCACGAAATGTTAAAACTGAACGAAAAGAAAACAACACGGTACCCGTTAAGCGGAATTCAGCTCTTTGGCTCTGTCCCACCACCATCCGTCTGTGTGTGCGTGTGTGTCCGTTACGATAGTCCCGTTATCTGGGAACCCCGGTAGCTTGCGAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU519641 True 960 lncRNA 0.41 1 5320045 5321004

Neighbor

gene id symbol gene type direction distance location
CI01000319_05112104_05116909 NA coding upstream 202971 5111633 ~ 5117074 (+)
CI01000319_04949418_04952350 PDK2B coding upstream 367695 4949305 ~ 4952350 (+)
CI01000319_04931863_04933044 NA coding upstream 386959 4931653 ~ 4933086 (+)
CI01000319_04907275_04915465 WIPF2B coding upstream 404449 4907006 ~ 4915596 (+)
CI01000319_04869169_04900787 PLAK, JUPB coding upstream 419145 4869169 ~ 4900900 (+)
CI01000319_05435510_05450379 NA coding downstream 114225 5435229 ~ 5450632 (+)
CI01000319_05618356_05625888 FLOT1, FLOT1A coding downstream 297352 5618356 ~ 5626767 (+)
CI01000319_05651284_05669061 KIFC1, ZBTB22B coding downstream 330110 5651114 ~ 5671460 (+)
CI01000319_05684798_05685353 NA coding downstream 363412 5684416 ~ 5685353 (+)
CI01000319_05704764_05712826 NA coding downstream 383079 5704083 ~ 5713885 (+)
G452574 NA non-coding upstream 25516 5294318 ~ 5294529 (+)
G452518 NA non-coding upstream 108064 5211768 ~ 5211981 (+)
G452504 NA non-coding upstream 151763 5164179 ~ 5168282 (+)
G452455 NA non-coding upstream 160295 5157380 ~ 5159750 (+)
G452458 NA non-coding upstream 166991 5152726 ~ 5153054 (+)
G452541 NA non-coding downstream 15081 5336085 ~ 5353023 (+)
G452597 NA non-coding downstream 35084 5356088 ~ 5427852 (+)
G452658 NA non-coding downstream 137327 5458331 ~ 5459625 (+)
G452547 NA non-coding downstream 178779 5499783 ~ 5503223 (+)
G452681 NA non-coding downstream 185524 5506528 ~ 5507227 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other upstream 529516 4787040 ~ 4790529 (+)
CI01000319_04515268_04534770 NA other upstream 784020 4515268 ~ 4536025 (+)
G452043 NA other upstream 1775326 3500279 ~ 3500512 (+)
CI01000319_03402932_03447997 BTR26, BTR25, BTR24, BTY, BTR22, BTR18 other upstream 1899445 3402112 ~ 3448275 (+)
G451662 NA other upstream 1985221 3333281 ~ 3334824 (+)
G452545 NA other downstream 32690 5353694 ~ 5356035 (+)
G452543 NA other downstream 38696 5359700 ~ 5371484 (+)
G452735 NA other downstream 387158 5712686 ~ 5712732 (+)
G452884 NA other downstream 801640 6122644 ~ 6124939 (+)

Expression


Co-expression Network