G452543


Basic Information

Item Value
gene id G452543
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5359700 ~ 5371484 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU519585
ATGTGTGAGTTCTCACATTGTCTCCAGCAGGCTCGTCCTCCGTGGCGGCCTGGATGGCATAGGCCAGGAAGCAGAGGATGGCTCCGATCCACAGCAGGATGGAAAACCCTCCGAAGAGCTGTCGGCAGAATTTGACCCACTCCGGGGTGGTGGGGGGCGGGGTGAGAGCGTTGGGACCATCACGAGCGAGGTACTCCGCCGCCTTAGCATTAGTCAGACCCTGTACAATGTCACTGTTGAACTTTCGGCATACTTCTTCAATTGACATCTTATGCTCTGTCAGTGGTACTTCTTTCTTCAGGTCATCCAGGTCTTTCCCTCCCTTTCCCTTCTTGGGAGACTCCTTCTCATCTTTGTCTTGCGTGGTCGCCACGCGGTAGCTGTCCGACCGTCCATACCCCATTTTGGAGCCGTCAGTCGCTGTCTCTTCAGTCTATCAACTGCGCTTGGTTTCAGTCAAGCGGGAGAGAAGAAAAAAAATGAAGCTCTTGAACGGATAACGACGGGCGGCGTTTGAACGACCCTCTGTCTATAAATTAAATCAATTTATGCATAAGGTTACCATGCATAATAATATATTAGAGGGGCTCTACATGAATAAAAAACTTAAAGAATGGGACAGGCTGCATTGGTTTTAAAAGCACATGTGGCTGCCTTTGATATAATGATAGAAGAGCATATGCAGCGCAGAGGATTATGAAGCGTCTCTGGCTGAAT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU519585 True 717 TUCP 0.49 4 5359700 5371484

Neighbor

gene id symbol gene type direction distance location
CI01000319_05112104_05116909 NA coding upstream 242626 5111633 ~ 5117074 (+)
CI01000319_04949418_04952350 PDK2B coding upstream 407350 4949305 ~ 4952350 (+)
CI01000319_04931863_04933044 NA coding upstream 426614 4931653 ~ 4933086 (+)
CI01000319_04907275_04915465 WIPF2B coding upstream 444104 4907006 ~ 4915596 (+)
CI01000319_04869169_04900787 PLAK, JUPB coding upstream 458800 4869169 ~ 4900900 (+)
CI01000319_05435510_05450379 NA coding downstream 63745 5435229 ~ 5450632 (+)
CI01000319_05618356_05625888 FLOT1, FLOT1A coding downstream 246872 5618356 ~ 5626767 (+)
CI01000319_05651284_05669061 KIFC1, ZBTB22B coding downstream 279630 5651114 ~ 5671460 (+)
CI01000319_05684798_05685353 NA coding downstream 312932 5684416 ~ 5685353 (+)
CI01000319_05704764_05712826 NA coding downstream 332599 5704083 ~ 5713885 (+)
G452541 NA non-coding upstream 6677 5336085 ~ 5353023 (+)
G452590 NA non-coding upstream 38696 5320045 ~ 5321004 (+)
G452574 NA non-coding upstream 65171 5294318 ~ 5294529 (+)
G452518 NA non-coding upstream 147719 5211768 ~ 5211981 (+)
G452504 NA non-coding upstream 191418 5164179 ~ 5168282 (+)
G452658 NA non-coding downstream 86847 5458331 ~ 5459625 (+)
G452547 NA non-coding downstream 128299 5499783 ~ 5503223 (+)
G452681 NA non-coding downstream 135044 5506528 ~ 5507227 (+)
G452685 NA non-coding downstream 141309 5512793 ~ 5513079 (+)
G452693 NA non-coding downstream 153948 5525432 ~ 5525655 (+)
G452545 NA other upstream 3665 5353694 ~ 5356035 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other upstream 569171 4787040 ~ 4790529 (+)
CI01000319_04515268_04534770 NA other upstream 823675 4515268 ~ 4536025 (+)
G452043 NA other upstream 1814981 3500279 ~ 3500512 (+)
G452735 NA other downstream 336678 5712686 ~ 5712732 (+)
G452884 NA other downstream 751160 6122644 ~ 6124939 (+)

Expression


Co-expression Network