G452708


Basic Information

Item Value
gene id G452708
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5538265 ~ 5538902 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU519774
ATTTTTTCCAGCTGATGAATGATAAAAACATGGACAGCCAGTCAGAATCCATTCTGCTTTAAGAGCAGTTTAAAAAAAAAAAAAATGTCCCTTTGTACATCCCTAGTGTGAAGTGACTGCATTGAATTTAATTCATTATAAATATAAATAACTTTTGACTTAATTATACCAGCTTGTGATGGCATGAATACATTAAATTAAATTATTACAGTAACAAAATACTGTATGCACTACTGTATGTTTGAGTGTGGGCGGTTATCTAGTAACAGTCAGTTACGTCATTGTTCATCTTAGTTTAAGTCAGTGAAAACATGGTCAGGTTAAAAAATAAAAAATAAAAAATAAAAAGTTTCTGCACCAGCTCTGACACAAGAATCAGCACCATTTTGATGGAAAACAAACACAATCATACTCCATCATCCATCATAGTCGAGGCAAAAAGCTTTCGAACACATGGATGAGAGCTTGTGTGAAATACTTAACATGTGCGGCTCTATTAGTAACTAGCTAATGCCGTCAGCCAGCTCACCATATGCACATTATGAGATTTGTACTCAGTAATGGAAATGTAAGTCCAATCCCAAATGCCCCAATCACATTTTATATTCACACTGGTTAGTCTGTACAGGAAATGAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU519774 True 638 lncRNA 0.34 1 5538265 5538902

Neighbor

gene id symbol gene type direction distance location
CI01000319_05435510_05450379 NA coding upstream 87633 5435229 ~ 5450632 (+)
CI01000319_05112104_05116909 NA coding upstream 421191 5111633 ~ 5117074 (+)
CI01000319_04949418_04952350 PDK2B coding upstream 585915 4949305 ~ 4952350 (+)
CI01000319_04931863_04933044 NA coding upstream 605179 4931653 ~ 4933086 (+)
CI01000319_04907275_04915465 WIPF2B coding upstream 622669 4907006 ~ 4915596 (+)
CI01000319_05618356_05625888 FLOT1, FLOT1A coding downstream 79454 5618356 ~ 5626767 (+)
CI01000319_05651284_05669061 KIFC1, ZBTB22B coding downstream 112212 5651114 ~ 5671460 (+)
CI01000319_05684798_05685353 NA coding downstream 145514 5684416 ~ 5685353 (+)
CI01000319_05704764_05712826 NA coding downstream 165181 5704083 ~ 5713885 (+)
CI01000319_05718732_05734284 NA coding downstream 179430 5718332 ~ 5734843 (+)
G452707 NA non-coding upstream 42 5537879 ~ 5538223 (+)
G452706 NA non-coding upstream 525 5537504 ~ 5537740 (+)
G452703 NA non-coding upstream 3234 5534758 ~ 5535031 (+)
G452702 NA non-coding upstream 5684 5532135 ~ 5532581 (+)
G452701 NA non-coding upstream 6194 5531854 ~ 5532071 (+)
G452709 NA non-coding downstream 468 5539370 ~ 5539712 (+)
G452710 NA non-coding downstream 1121 5540023 ~ 5540242 (+)
G452711 NA non-coding downstream 1553 5540455 ~ 5540835 (+)
G452712 NA non-coding downstream 2565 5541467 ~ 5541674 (+)
G452690 NA non-coding downstream 22868 5561770 ~ 5562044 (+)
G452543 NA other upstream 166781 5359700 ~ 5371484 (+)
G452545 NA other upstream 182230 5353694 ~ 5356035 (+)
G452541 NA other upstream 191271 5336085 ~ 5353023 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other upstream 747736 4787040 ~ 4790529 (+)
CI01000319_04515268_04534770 NA other upstream 1002240 4515268 ~ 4536025 (+)
G452735 NA other downstream 169260 5712686 ~ 5712732 (+)
G452884 NA other downstream 583742 6122644 ~ 6124939 (+)

Expression


Co-expression Network