XLOC_013083


Basic Information

Item Value
gene id XLOC_013083
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 47769087 ~ 47809731 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026939
AATTGATTGTGATGCTTTCCAGGTGATGCACTCTCAGCTTTCTGGCAAGACTGTGCAGTTCCTGGTCAGGGGGGAGCGTTTGAGGGCAGTTGCCGTAGTGTAGCCTCCACAACACAAGCTCTCGAATTAGCACAGCACTCTGTCCTAACTGCTTTGGCATGGCCAGGCCACTGTTACACAGCTGGGTATCTGCCTGAGAGCAGCTGCCGAGTGCCTGAAGCAAGCGGCATTTTAGTCAGTCTGCTACCCGCTCTCCCTCGTCccagtttcttttttctgctgcTCCCCCGGTGACTAACATCATACTCCGCTCACACTATACACACGGGGCCTCTCCTGTTTGAGTCAGCCTGAACTCTGCCACCAACAATGAACCTAGCATTTACTTCAGCTTCTGGGTTCACGAATGGCTGCAATTACAACCATTAGCATGCTTAATTAACAGATTCACTGGCAGCCGGAGCAGAGCATGGCACCTTCTTTTAGTCCACAGCCAAGCACCTGGCCCTGGCGCGGCACACTCCCACGTCAGCTCAGCAAGGTGTGTAATTTGAAAGAAAGTGATACAATTGCTGTTTCTTCTCCTATGCGCCTTATTTTCGCTAGTATTTTTCTCACTTCATCGAGCCTCTTTGATTCATCCACTTTCTTACGTGCCACAGCTGACAGTGACCTAAGAAGAGGTTAATGGCAATATTTTCACACGCCATTCTGTGATAATGACATAGttctaaaaagaaataaaaacaaacaacttGGTAAACAAATATAATCAGAAAGAggcacaatgattttttttttctttttcacaggGCAACCGAGGAACGATTGGCAGGAGTGGGAACTGGCACCAGCCTTAGTGCCAACAATCAATGGtgccaatacttttttttttcttctccctcTTCTGGAATGCTACATCACACAACTCATAATATTTCTTTGCTCGTCTGTCTTCACTGGATTTAGACACTGCCTCACCACAGAGTTTTCCCCAGAGGCGCCGCTACGAGGGGAACAGTAGGACGATAGGACAATAATAAGGGCTCACAGTGTCTTGGGGCCCCCAGAAGTTCTATTGGGAGCCCACCAGATCCTAAGCCACTACACCAATCCCTTCAATTCCCGCGCTGTTGAGTTTTGTGTGAGACACCCATCCACCACCACAAACCCCTGCCCCACCCCGCCCTCCCCACGCATTTTGACTTTAGACACCTACACCAGGACACAGGCCAACATCTACTATCTTCACCCAACCAACTCCCCATCCCACCACTCCCCGCTTTTCACTTTCAACAATGATACAGACCCTaagcccccccacccccccccccccccccaaaccttGCCATGTTATCATATGGCTTATATCGGCCAGCGGCGCCTCTGTTCCTCACCTAGCAGGGTAAATCTGCCTGATCTTTGTAGTTACTTGAACCATGTTtcctatacatttatttaaat
>TCONS_00026940
AATTGATTGTGATGCTTTCCAGGTGATGCACTCTCAGCTTTCTGGCAAGACTGTGCAGTTCCTGGTCAGGGGGGAGCGTTTGAGGGCAGTTGCCGTAGTGTAGCCTCCACAACACAAGCTCTCGAATTAGCACAGCACTCTGTCCTAACTGCTTTGGCATGGCCAGGCCACTGTTACACAGCTGGGTATCTGCCTGAGAGCAGCTGCCGAGTGCCTGAAGCAAGCGGCATTTTAGTCAGTCTGCTACCCGCTCTCCCTCGTCccagtttcttttttctgctgcTCCCCCGGTGACTAACATCATACTCCGCTCACACTATACACACGGGGCCTCTCCTGTTTGAGTCAGCCTGAACTCTGCCACCAACAATGAACCTAGCATTTACTTCAGCTTCTGGGTTCACGAATGGCTGCAATTACAACCATTAGCATGCTTAATTAACAGATTCACTGGCAGCCGGAGCAGAGCATGGCACCTTCTTTTAGTCCACAGCCAAGCACCTGGCCCTGGCGCGGCACACTCCCACGTCAGCTCAGCAAGGTGTGTAATTTGAAAGAAAGTGATACAATTGCTGTTTCTTCTCCTATGCGCCTTATTTTCGCTAGTATTTTTCTCACTTCATCGAGCCTCTTTGATTCATCCACTTTCTTACGTGCCACAGCTGACAGTGACCTAAGAAGAGGTTAATGGCAATATTTTCACACGCCATTCTGTGATAATGACATAGttctaaaaagaaataaaaacaaacaacttGGTAAACAAATATAATCAGAAAGAggcacaatgattttttttttctttttcacaggGCAACCGAGGAACGATTGGCAGGAGTGGGAACTGGCACCAGCCTTAGTGCCAACAATCAATGGtgccaatacttttttttttcttctccctcTTCTGGAATGCTACATCACACAACTCATAATATTTCTTTGCTCGTCTGTCTTCACTGGATTTAGACACTGCCTCACCACAGTCTCATTCTCTGGGCAGAGCCGTAAGATACAGGTAGTCCTGCTGACACCAGGATATTCGCCACATCATTGATGCTAATGGACGGCGATATGGAGCTGTTGTCTCGTGTCTGCTCTTGCATAAAGACCCAAGAGCCACTAACCCAAGATGCTGAGCAGAGTTTTTATGTGGCCATTTGAGTCAGTCACCTTTCTGATGGATGCTACGGTAGGTCATTCCTCGCTAAACTCATCCAGAAAGAACAAACCCATAAAGGAAGGACACTGGAGAACGAGGAagcattaaaaggatagtttaaccaaaaataaaaacggCCTCCATCATTTCTCACCTTCAAGCTGACTTCTGGTCAGTTTGACTTTGTATCATCTGTCGAATGCTTAATGATGGTGTTTTGAGAATGAAAATCTCTAAAAGCGCAGTGGCTTCTGTCAATATGGAATAAACTGGATTATGAAATGTTCCCTAAAGTCAAACATGTTTTGAACaattactttcatttttttttttggtaagctAACTCTTTGAAAGTGCTTACACACTAGCACTTTTGTTCAACACCCGAGTTTGTTTGACGACAAAGTATGGTACctttagctagtgtgaatgtgTCTTCTGAAGTCGGGTGTGCAGTTGTGAACCATACCCTAGTCTGCCTGAAAGAAGTGGTCgaggcaggggtggccaaccctgttcctggagatctaccttcctgcagatttcagttgcgaCTCATATCACACAcatctgaaccaattaattaggacctgaacaccatgtgataattacagtcaggtgtgtttgatatgggttgcaactgaaatctgcaggaaggtggctctccaggaacagagttggccACCACTGGTCTGGGGTATGGTTCGTGCGAACTCTTGGatggttcacttctgatatgaatgcaattgtACCAAATAATGCAAGTGAACCACCAAATACACAACAGACTTTAGTGTTTATaacgttcatttgtgtgtgtatacctgtgtATCACCTACCTTGGTGATAAGCAGAACTGACCTAGTGGAAACAAGGTTAATGTTTGCTTGTCTACACCAAAAACGACTTCTGCAGACATCACATTTAAGGATTCGGATTTCTACCTTCCAATCCATCTCAGCATGGATCAttgtttatccttttctcatcatccggtttctcattattttaattaaagatgACTAATAACTAATGTATAagttaaaacactgctttatgtaGGAATGCTCAGTGTCCTTGCTCCTCTCTTTGtttgtctattttaactttgtttccAGGAGACACATAAACCAGATGATAGTCATGAAGACCTCCCCTCTctctcaattaaattaaattaaattcaattcaattcaattcaattcaattcaattcaattcaattcaattaaattcaattcaattcaattcaattcaataattgctttattggcatgagaaattttacaaatg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026939 False 1464 lncRNA 0.49 2 47769087 47770717
TCONS_00026940 True 2454 lncRNA 0.42 2 47769087 47809731

Neighbor

gene id symbol gene type direction distance location
XLOC_013082 NA coding upstream 270896 47444191 ~ 47498191 (+)
XLOC_013081 NA coding upstream 343183 47380549 ~ 47425904 (+)
XLOC_013080 barx2 coding upstream 422760 47313715 ~ 47346327 (+)
XLOC_013079 rbm7 coding upstream 462240 47301086 ~ 47306847 (+)
XLOC_013078 NA coding upstream 586011 47180988 ~ 47183076 (+)
XLOC_013084 NA coding downstream 63613 47873344 ~ 47875977 (+)
XLOC_013085 CABZ01086755.1 coding downstream 181060 47990791 ~ 48124888 (+)
XLOC_013086 smtla coding downstream 359024 48168755 ~ 48178125 (+)
XLOC_013087 NA coding downstream 374328 48184059 ~ 48204254 (+)
XLOC_013088 fli1a coding downstream 614242 48423973 ~ 48487875 (+)
XLOC_013077 NA non-coding upstream 696571 47062356 ~ 47072516 (+)
XLOC_013076 NA non-coding upstream 843214 46913104 ~ 46925873 (+)
XLOC_013089 CR786562.2 non-coding downstream 628766 48438497 ~ 48438613 (+)
XLOC_013090 NA non-coding downstream 714206 48523937 ~ 48556827 (+)

Expression


Co-expression Network