Item | Value |
---|---|
gene id | G452705 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000319 |
NCBI id | null |
chromosome length | 6428943 |
location | 5593404 ~ 5654938 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU519768 | False | 1364 | lncRNA | 0.34 | 2 | 5593404 | 5654938 |
TU519769 | False | 4189 | lncRNA | 0.37 | 4 | 5593404 | 5598639 |
TU519770 | True | 5083 | lncRNA | 0.41 | 11 | 5593404 | 5613869 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000319_05435510_05450379 | NA | coding | upstream | 142772 | 5435229 ~ 5450632 (+) |
CI01000319_05112104_05116909 | NA | coding | upstream | 476330 | 5111633 ~ 5117074 (+) |
CI01000319_04949418_04952350 | PDK2B | coding | upstream | 641054 | 4949305 ~ 4952350 (+) |
CI01000319_04931863_04933044 | NA | coding | upstream | 660318 | 4931653 ~ 4933086 (+) |
CI01000319_04907275_04915465 | WIPF2B | coding | upstream | 677808 | 4907006 ~ 4915596 (+) |
CI01000319_05684798_05685353 | NA | coding | downstream | 29478 | 5684416 ~ 5685353 (+) |
CI01000319_05704764_05712826 | NA | coding | downstream | 49145 | 5704083 ~ 5713885 (+) |
CI01000319_05718732_05734284 | NA | coding | downstream | 63394 | 5718332 ~ 5734843 (+) |
CI01000319_05742834_05745945 | NA | coding | downstream | 86393 | 5741331 ~ 5746141 (+) |
CI01000319_05796587_05803719 | ABCB3L2 | coding | downstream | 138750 | 5793688 ~ 5804150 (+) |
G452805 | NA | non-coding | upstream | 4509 | 5586786 ~ 5588895 (+) |
G452804 | NA | non-coding | upstream | 10843 | 5582351 ~ 5582561 (+) |
G452690 | NA | non-coding | upstream | 31360 | 5561770 ~ 5562044 (+) |
G452712 | NA | non-coding | upstream | 51730 | 5541467 ~ 5541674 (+) |
G452711 | NA | non-coding | upstream | 52569 | 5540455 ~ 5540835 (+) |
G452769 | NA | non-coding | downstream | 20490 | 5675428 ~ 5678025 (+) |
G452735 | NA | non-coding | downstream | 55955 | 5712686 ~ 5712732 (+) |
G452820 | NA | non-coding | downstream | 84155 | 5739093 ~ 5739474 (+) |
G452821 | NA | non-coding | downstream | 94902 | 5749840 ~ 5750457 (+) |
G452543 | NA | other | upstream | 221920 | 5359700 ~ 5371484 (+) |
G452545 | NA | other | upstream | 237369 | 5353694 ~ 5356035 (+) |
G452541 | NA | other | upstream | 246410 | 5336085 ~ 5353023 (+) |
CI01000319_04787066_04788609 | EIF1B, EIF1, GM6900 | other | upstream | 802875 | 4787040 ~ 4790529 (+) |
CI01000319_04515268_04534770 | NA | other | upstream | 1057379 | 4515268 ~ 4536025 (+) |
G452884 | NA | other | downstream | 467706 | 6122644 ~ 6124939 (+) |