Gene
RNA
| Item | Value |
|---|---|
| gene id | G452821 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000319 |
| NCBI id | null |
| chromosome length | 6428943 |
| location | 5749840 ~ 5750457 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU519901 | True | 467 | lncRNA | 0.40 | 2 | 5749840 | 5750457 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000319_05742834_05745945 | NA | coding | upstream | 3699 | 5741331 ~ 5746141 (+) |
| CI01000319_05718732_05734284 | NA | coding | upstream | 14997 | 5718332 ~ 5734843 (+) |
| CI01000319_05704764_05712826 | NA | coding | upstream | 36749 | 5704083 ~ 5713885 (+) |
| CI01000319_05684798_05685353 | NA | coding | upstream | 64487 | 5684416 ~ 5685353 (+) |
| CI01000319_05651284_05669061 | KIFC1, ZBTB22B | coding | upstream | 78380 | 5651114 ~ 5671460 (+) |
| CI01000319_05796587_05803719 | ABCB3L2 | coding | downstream | 43231 | 5793688 ~ 5804150 (+) |
| CI01000319_05812788_05816097 | NA | coding | downstream | 62236 | 5812693 ~ 5816171 (+) |
| CI01000319_05816948_05819499 | PSMB8F | coding | downstream | 66368 | 5816825 ~ 5819499 (+) |
| CI01000319_05828294_05834113 | NA | coding | downstream | 77550 | 5828007 ~ 5835085 (+) |
| CI01000319_05872448_05880610 | BRD2A, BRD2 | coding | downstream | 121493 | 5871950 ~ 5880610 (+) |
| G452820 | NA | non-coding | upstream | 10366 | 5739093 ~ 5739474 (+) |
| G452735 | NA | non-coding | upstream | 16904 | 5712686 ~ 5712732 (+) |
| G452769 | NA | non-coding | upstream | 71815 | 5675428 ~ 5678025 (+) |
| G452705 | NA | non-coding | upstream | 94902 | 5593404 ~ 5654938 (+) |
| G452805 | NA | non-coding | upstream | 160945 | 5586786 ~ 5588895 (+) |
| G452748 | NA | non-coding | downstream | 1261 | 5751718 ~ 5752959 (+) |
| G452825 | NA | non-coding | downstream | 104498 | 5854955 ~ 5855198 (+) |
| G452826 | NA | non-coding | downstream | 105948 | 5856405 ~ 5856609 (+) |
| G452798 | NA | non-coding | downstream | 197084 | 5947541 ~ 5951211 (+) |
| G452784 | NA | non-coding | downstream | 216433 | 5966890 ~ 5967329 (+) |
| G452543 | NA | other | upstream | 378356 | 5359700 ~ 5371484 (+) |
| G452545 | NA | other | upstream | 393805 | 5353694 ~ 5356035 (+) |
| G452541 | NA | other | upstream | 402846 | 5336085 ~ 5353023 (+) |
| CI01000319_04787066_04788609 | EIF1B, EIF1, GM6900 | other | upstream | 959311 | 4787040 ~ 4790529 (+) |
| G452884 | NA | other | downstream | 372187 | 6122644 ~ 6124939 (+) |
