XLOC_013085 (CABZ01086755.1)


Basic Information

Item Value
gene id XLOC_013085
gene name CABZ01086755.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 47990791 ~ 48124888 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025993
CAAACAGGCAAAGCTGTGGACACCTTGGGTCCTGGTAGCACCTGTTAGGAGTTTGGCTAGCTGATCTGAAGAGTCCGCAGAACAGAGCCTGTGGTCAAGGACAGCAGGTTGACTGAGGAGGAAAATAAAGAGCATAAGGAGACTGGAGAAGAAGGTAAAAGCCTGCATCTTCATATCTGCTTCATGTGTTGAAGTTTTA
>TCONS_00025994
CTTAGCGGCCCCGGCATCATGTCATATTTAGATACACTGGAGTCTCATAAACCCAGGCATAATGGAGATCTGTTTCTTTCAGAGTCCGCAGAACAGAGCCTGTGGTCAAGGACAGCAGGTTGACTGAGGAGGAAAATAAAGAGCATAAGGAGACTGGAGAAGAAGtgtgtatttGGTACAAAATAAATATCAGCATCGGCATCAAATTGTACAACCCAGGCTCCTTATcgaaacgtacccctatatacatttctggagaacgcgaAATATATCCCAGaaggtacgtttttttgcagtttttttttttgcaaattcaccAGAAGCTACTGTTtact
>TCONS_00026942
CCAGGCATAATGGAGATCTGTTTCTTTCAGAGTCCGCAGAACAGAGCCTGTGGTCAAGGACAGCAGGTTGACTGAGGAGGAAAATAAAGAGCATAAGGAGACTGGAGAAGAAGTTTGATCCACTCCGTGCCCTGCGAGAGGTCGGTCTCATCTCTAATTCCTGACCAGGAAAGGTATGCCCCCTACCCGGGTCTGATCTTGGTGTGCGATCCGAACCTCCTTGATATGGATTACGTGTGTCCAGTGCCTCAGGTTCCTCCGCAGCCGCTGTGTTTGAGTCAAGCCTCTGTACGACCTCTCTACAAGCTGTGAAACCCTGCTTATTGATTGACTACGACGAGAAGCCTC
>TCONS_00026941
CCAGGCATAATGGAGATCTGTTTCTTTCAGAGTCCGCAGAACAGAGCCTGTGGTCAAGGACAGCAGGTTGACTGAGGAGGAAAATAAAGAGCATAAGGAGACTGGAGAAGAAGTTTGATCCACTCCGTGCCCTGCGAGAGGTCGGTCTCATCTCTAATTCCTGACCAGGAAAGTGCCTCAGGTTCCTCCGCAGCCGCTGTGTTTGAGTCAAGCCTCTGTACGACCTCTCTACAAGCTGTGAAACCCTGCTTATTGATTGACTACGACGAGAAGCCTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117712

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025993 False 199 lncRNA 0.47 2 47990791 48086129
TCONS_00025994 False 335 lncRNA 0.42 2 48085920 48091102
TCONS_00026942 False 348 lncRNA 0.52 2 48085972 48124888
TCONS_00026941 True 277 lncRNA 0.51 3 48085972 48124888

Neighbor

gene id symbol gene type direction distance location
XLOC_013084 NA coding upstream 114814 47873344 ~ 47875977 (+)
XLOC_013083 NA coding upstream 181060 47769087 ~ 47809731 (+)
XLOC_013082 NA coding upstream 492600 47444191 ~ 47498191 (+)
XLOC_013081 NA coding upstream 564887 47380549 ~ 47425904 (+)
XLOC_013080 barx2 coding upstream 644464 47313715 ~ 47346327 (+)
XLOC_013086 smtla coding downstream 43867 48168755 ~ 48178125 (+)
XLOC_013087 NA coding downstream 59171 48184059 ~ 48204254 (+)
XLOC_013088 fli1a coding downstream 299085 48423973 ~ 48487875 (+)
XLOC_013089 CR786562.2 coding downstream 313609 48438497 ~ 48438613 (+)
XLOC_013090 NA coding downstream 399049 48523937 ~ 48556827 (+)
XLOC_013078 NA non-coding upstream 807715 47180988 ~ 47183076 (+)
XLOC_013098 NA non-coding downstream 999877 49124765 ~ 49156952 (+)
XLOC_013099 BX663503.1 non-coding downstream 1068936 49193824 ~ 49215023 (+)

Expression


Co-expression Network