G452798


Basic Information

Item Value
gene id G452798
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5947541 ~ 5951211 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU519873
ACGCAGAGGAAATATAACACATTTAGTTCCAGGTAATGCCTATGAGCATCACACTATCATTGAACGTGAATAAATAGAAGATTGAAATGCTTTGATTGATTAAACATGACTAATAAACACATGACAATATATGGTTTATCGGAGTTCTTCAAGCCTTCTCGGGTATTTTCATGATAATAAAGTATATTTATAATGCAATGCTAATCTTTATCACTGTATAAAGCCTTTATCACTGTATAGAATACTATATTCTTTTATGCCTTGTTCTGTGTAAGAAGCCACATCATCTCACAGAAGGATGTTATTACAATTCATATTCTTTTGGTTTCTCTCTCTAAGATTTTTTTTAAATTACAAATGCAATGAAAATATGTCACTGGCAAGTACCAAAAATCCAAGTATTTGATATGGAAGAACGTTAATATCAGAATATCCTTAGTATGAACGAATATGAATTGAATGTTTATGACTTTGTGGACTGACCTGGGTTGAAGAGGATGATGGCTCTCAGGCAGCCCAACTCTGTTTTATCCATCTGCATGTCTCTCATTTTGCTCACCAGCTCCGTCAGCACCCTGACGCCATAATAATGGGGCAGAACGGGGCATAGGATGAAAAGTAGGAAGGGAAGGTGGGGAGAAAAAAAAGAAGACTCAGGTTAATGTCTGAAATACAACAAATCACAAATCAGGCAACAGAAAAAAGCTTGCTAGAGCTGTTTTCATAGCCACTTCAAAATATACAAAACAACATGGGATACAAATATAACAGTCTTCAGATTTCATCTTAATAGCACTAAAAGAACAATCAGAAAGTAACTTCTTAAAAACAGAGCATGCCACGTACAACATCAGTCACTCTTGCTAACATTGTTAGTCCAAGCAATGCATTCAGTCACACAGACACAAGGTCAGTTTGGTCTTTACCTGCCCCAAACAGCCCCAGACATAATTTTATCCTAAATAAACTCTCAAGCTACAGGCTTTTCTGACTGCTGCTGTTTGTTTATGGCGTGTGGCGGAGTGTCATTACCTGTCGAATATGGCCCCAACCTCTGCATTGTGCGCACTCTCCCTGTGTGTTCAATCACAATGTGTTATTAAAATGTCATTACACATATCATTGTTAAATAATGTCTCCCCACTCCAGAAAGGCCCAGGCAGAGACGTTAAGACTCCACGTATGTTGGCGGTAGGCCCAGTTCAAAGAGTAACAAGCTACAGGCTCTTGTTGAAAGGAAGGCAGATCATGGGTTGGCGGCAATGAAGCTTGAAATGACAATTCCCAGCGCAGAACAAATACAACATAACATGATGGGGAAAAAAATCTTTGACAGGATAAGACCAGGGCTCAACAATAAGGATGGACACTTCAACAATTTTATCATGCACGTGTAATTTCAAGTCATGCAAACATTGATGTTTTGTGCATTGATGTTTTGCAAACCTCATAAAGGTTCTCTTAAAATCTGTTGAGCATTAGTTAAAATAAATGTAATACATGTGTTATTCACACATAATTTCTAGCTACTGAAAATTACATTTATTCTTTTAATACAAAATATAACAAAACTATGAAAAATGCTAATAGAAATAAGTATTTTATTTTAATTTCAGATTTTTGCTAATGCGGCCTGTAAATATTTGAACAAAAGTACAAATTTAAACAAAATCACTGTTGAGCCCTGAAGGAAAAAAAATCATAATATTAATATTGTTGTTGTTGTGGAATATAACAGTTCATTCATTTGTGGTATCATTATGCACTATATCATTCAGCATGCCTTAATTGCTTAAAATGCACATAAAATGATTCTGAAGACATGTCAGATTTTGCACAGAGGGTTAAAAAGCATTTAAAGCATGAGCCAATAAAGCAAAGCAAGAAGCATGTGGCACACATCACACGGCACCAACAGGACGACAATGAAGCGCTGCAAAAATCAGGTGAGATGGACAGTGAAGCACAAGGACAGGGAGGCTCATTTCTGAAGCAGAGACATTATGACAAGATGAATGGCAACAAAAGACAATTTCAAATGAGCATCACAACAAACTGTAGCACAGCACATCTAGAATGAGCTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU519873 True 2086 lncRNA 0.36 2 5947541 5951211

Neighbor

gene id symbol gene type direction distance location
CI01000319_05887712_05890105 HSD17B8 coding upstream 56747 5887518 ~ 5890794 (+)
CI01000319_05882023_05885700 NA coding upstream 61736 5882023 ~ 5885805 (+)
CI01000319_05872448_05880610 BRD2A, BRD2 coding upstream 66931 5871950 ~ 5880610 (+)
CI01000319_05828294_05834113 NA coding upstream 112456 5828007 ~ 5835085 (+)
CI01000319_05816948_05819499 PSMB8F coding upstream 128042 5816825 ~ 5819499 (+)
CI01000319_05974099_05976045 CCDC127B coding downstream 22888 5974099 ~ 5976055 (+)
CI01000319_05978795_05979500 NA coding downstream 26984 5978195 ~ 5979549 (+)
CI01000319_05981549_05984687 NA coding downstream 30338 5981549 ~ 5985215 (+)
CI01000319_06031126_06031401 NA coding downstream 79915 6031126 ~ 6033230 (+)
CI01000319_06044073_06049600 NA coding downstream 92862 6044073 ~ 6049961 (+)
G452826 NA non-coding upstream 90932 5856405 ~ 5856609 (+)
G452825 NA non-coding upstream 92343 5854955 ~ 5855198 (+)
CI01000319_05796587_05803719 ABCB3L2 non-coding upstream 143843 5793688 ~ 5804150 (+)
G452748 NA non-coding upstream 194582 5751718 ~ 5752959 (+)
G452821 NA non-coding upstream 197084 5749840 ~ 5750457 (+)
G452784 NA non-coding downstream 15679 5966890 ~ 5967329 (+)
G452856 NA non-coding downstream 34497 5985708 ~ 5986065 (+)
G452880 NA non-coding downstream 100156 6051367 ~ 6051568 (+)
G452760 NA non-coding downstream 107338 6058549 ~ 6060505 (+)
G452881 NA non-coding downstream 111807 6063018 ~ 6064372 (+)
G452735 NA other upstream 214605 5712686 ~ 5712732 (+)
G452543 NA other upstream 576057 5359700 ~ 5371484 (+)
G452545 NA other upstream 591506 5353694 ~ 5356035 (+)
G452541 NA other upstream 600547 5336085 ~ 5353023 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other upstream 1157012 4787040 ~ 4790529 (+)
G452884 NA other downstream 171433 6122644 ~ 6124939 (+)

Expression


Co-expression Network