G452768


Basic Information

Item Value
gene id G452768
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 6085839 ~ 6088623 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU519843
CTGATTTATGAAAATGTGCTCACAGTCAGAGATCATTTCATTGTTTTATATGGAAGATGTCCAATTGTACATTTTAACATGAAAAAACATGAAATACAAAAAAGAACTTTTCGAAAAGAAGACTTCAGAAGTACAAAAACAAACAACATACAAGGTGCTGCATTTCATCTTTTTTCTCCCCCTGTGTGCTTTCCATTGAGAAAATTAAAGTGCAAGACAAACACCAGGGTTCAAATGTTTTAAAAAGAAACTGCTCAACTCTGAACAAATATCAGATCCTTTTGTAACTTTTTAAAAACATATTCAATACACAAACCATGCATGGACTGACTAAAAAAAGATGGTAATCAGATTTTAACATTAGACATGTTAAATGTCTATGGTAAAAATGGCAGGGTCAACTCATGGCATAGTACTGACACGCACAACAAATGAACACTTACGCAGATTCCACGGGGTTGATAGAAAAACTAATGAACAATTCTACATGACTCGGTGAGAAGTTCATGTGCTAGACACGCTCGCGACTGGTTTCTTTTGAGTTTGTCACAATGAAACATAAGAATTACCAACACTGATGGGAAATTACAACACACGATCGTCACCTTGACCACTCATGTGATCGGCGTGTCATTTTGGTTTTCCTTCTTTTTGAGGGCAACAGTTTTGTGAGCCTTTACCAAACAGTAAAAACATAATCCACTCGATGCTTCAGAGCGTAATCACAACCTCATAAATAATGCAAAGAAAATGGATATTTACAGAGCACAGTGGTTTGTATGAGGCACTATGTTGTACTGAACATTTTACATTTCTGTGGTGTGACATTGTACTTGCAACAAAAAATTACATTATTCGTCTGTGGACTATAAGGATATGAATAATCTATCCATAAATGGATGTAAGTGATTATATACCCAAATGCTTTATTTATTCCCACAGAATAATATGAAAGCTTGTTTCTGCCACAGAATAAAAAAATATAAAAGGTAATTGCTACCTTTTATCTCACAATTCAGACTTTTTCTTGCAATTGCAAGTTTGTTTCTCAGAATTCGTAACTTTTTTTTTCAGAATTGCGAGTTTTATCTCACAAGTCGGAATTCATAACTCACAATTTTAAGTTTTTATCTTGCAATTCTGACTTCATAACTGCCAATTGCGAGTTTATATTTCTCAATTCTGAGAAATAAAATCAGAATTGGGGGAAAAAAAGAAGAAGTCAGAATTGCGAGATATTAACTCAAATGCGAAAAAAAATCTAAATGGCAAGAAATTAACTCACAATTATGGGCTAAAAAGTCAGAATTGCAAGTTTATATCTTGCAATTCAGACTTCATAACACAATTGCAAGTTTATATCTCAATTTTGGGGGAAAAAAAATAAGAATCGAGAGATATTAATTCACAATTCCGAGAAAAAAGTCAGAGTTGCGAGTTTATATCTCGCAAGACTTTAACTCGCAATTGTGACTTTCTATCACAATTCTGACTTTTTTTTCAGGATTGAGAGTTTATATCTCACAATTTTGACTTCATAATTGAGAAATATCAACTCGCAATTGTAAATTCTGAGAAATAAAATCAGAATTGAAGAAAAGTCAGAATTGCGAGATATTAGCTCATAATTGTGAGTTAAATTCAGATTTGAGAGTTTATATCTCACAATTTGGACTTCATAACACAGTTGCAAGTTTATATCACAATTTTGAGAAAACAATTAACTTACAATTGCGAGAAAAAAGTCTTGAGATAAAAAGTGGCAATTACTGCTTTTATTTTTATTCCCCGGCGTAAACAAGCTTCCATAAAACAACCCTTTTAAACTGCTTTCATTCACTTTTCAGGTTCAGATCTGTCAAATCTGATTATTTACACTCATTCCTCTATCATGTAATATATCAGATCCATATTAATCTAATGTCCCACTGTTCAGTCATTTATGTGAACTTTGTTTTTAACAACTAAGTAATCGACTTCATTAACGGTTTGAGGTTTATTAAATTAAATTACATGTTTTTGTCAATGTATTCTTTAAAAAAAAAATGTAAGTCTGGTATTTTATTTCACAGGATACAGAATTGCTGTTGTCAGGATATTGAGATATAACATTAGTATTCAAATCTCAAGACTGCAAATGAGGCAGAATATTAGAACTGTGCACTGCCTTTAGAAGGGAAACTAAATCATAATACAAAACACAAATGATCAAAAAGCAACAGGCCCTACAACATCACATTGTACAAAATAAAAAGCTCCCGCAATTATAATAAAGAATTCAATTATTTTGGTTAGAGTCAAAATTTAAACCTTGAGTAAACTGAGCAGCCGCTTTTATTCAGAATTAAACATGACATATATAGCACATTCATTTCACGAGCCTAAATGTAATTTATGCTAACGCACCGCTAGCAGGCTGTCTGACAGCCGGTTGCCATTCTGCAAACATTGTACCGTGGTAACTCTACCCAGAATCAGCACCAGTGAGCAGCGGACGTTAAGTGCAGTCAAACTGCTGATTGGTGAAATCACTGCGATGTGAATCACAATCATTTGCGTTAGTAAAACCCGTTTAGCTTTTTTAAAGCACCATTACTCCATCATAAATTTAACACTCCTACTCATTTCCCATCTCACATATATTACTACAATATTTGAATAAATAACAACATCTGACTCCAAATCTCTTCATAAATAAATGGAGTGGCATTGTTTTTAAAGGGTTAGTTCACCCAAAAATAAAAATTCTGTCAGTAATTACTCACCCTCATGTCGTCCCACACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU519843 True 2785 lncRNA 0.33 1 6085839 6088623

Neighbor

gene id symbol gene type direction distance location
CI01000319_06070748_06083546 FAM63A coding upstream 2075 6068131 ~ 6083764 (+)
CI01000319_06054270_06057766 SF3B4 coding upstream 27940 6053847 ~ 6057899 (+)
CI01000319_06044073_06049600 NA coding upstream 35878 6044073 ~ 6049961 (+)
CI01000319_06031126_06031401 NA coding upstream 52609 6031126 ~ 6033230 (+)
CI01000319_05981549_05984687 NA coding upstream 100624 5981549 ~ 5985215 (+)
CI01000319_06100790_06101982 MRPL24 coding downstream 11583 6100206 ~ 6102078 (+)
CI01000319_06103395_06107623 NA coding downstream 14637 6103260 ~ 6108482 (+)
CI01000319_06133262_06139477 PBXIP1A coding downstream 44639 6133262 ~ 6140633 (+)
CI01000319_06142385_06143926 S100A11, S10AB coding downstream 53762 6142385 ~ 6144063 (+)
CI01000319_06150880_06153732 NA coding downstream 62257 6150880 ~ 6154429 (+)
G452881 NA non-coding upstream 21467 6063018 ~ 6064372 (+)
G452760 NA non-coding upstream 25334 6058549 ~ 6060505 (+)
G452880 NA non-coding upstream 34271 6051367 ~ 6051568 (+)
G452856 NA non-coding upstream 99774 5985708 ~ 5986065 (+)
G452784 NA non-coding upstream 118510 5966890 ~ 5967329 (+)
G452792 NA non-coding downstream 25878 6114501 ~ 6116089 (+)
G452782 NA non-coding downstream 27644 6116267 ~ 6118185 (+)
G452895 NA non-coding downstream 140993 6229616 ~ 6229948 (+)
CI01000319_06316911_06319511 CKS1B.L, BRAFLDRAFT_59154, CKS1, CKS1B, CKS1B.S, CKS2 non-coding downstream 227985 6316836 ~ 6319569 (+)
CI01000319_06321729_06328918 NA non-coding downstream 233523 6321729 ~ 6329654 (+)
G452735 NA other upstream 352903 5712686 ~ 5712732 (+)
G452543 NA other upstream 714355 5359700 ~ 5371484 (+)
G452545 NA other upstream 729804 5353694 ~ 5356035 (+)
G452541 NA other upstream 738845 5336085 ~ 5353023 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other upstream 1295310 4787040 ~ 4790529 (+)
G452884 NA other downstream 34021 6122644 ~ 6124939 (+)

Expression


Co-expression Network