XLOC_013087


Basic Information

Item Value
gene id XLOC_013087
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 48184059 ~ 48204254 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027182
CTTATCGGAGGCTGTAAATCAGCGTCTGTCAGTCAGTCCGTCTGTCTGTCATGGCGAGGCTCTTGCGGGCAGGATGTGGATCTGAGGCCTGGTGTCAGCAGTGGCAGATTCAGCTTCAGCTTCCTCTCTAATAATCATTTCAACATGGAGGATAAACCGCCAGAAACACCTCCACCCTCAGCCCCCTTCCGCTCCACAGCCATAAATATTCAAGATCTGCTATATGTGGAGTTCGGTGACTCGATGAGTTCACAGTCTGAGCATTATAACCTCAGgtaaatgaaggtgcagctgcattacagagctcctctatttataataagaagaaaaaagaaaaaaaacctgcaaGTAATAAAGAGATCGAGCTTCAGCAAAGATAATGTCCAGCAGATGGCAGTCAAAGCCCTTCTAATATTCCAGCCTCCTTCCCTCCAGACGCTGCGTGGCACATCATAAACACAAGGCCAAATAATCGTTATCAGGAATGAAGCTTCACTGCTCGCTCATTGTCGGCTCTTCAGAAGTTCACAAAGATCTAGATATGGCCTTGTTTGCGCAGTATAGATTTATGATAGAGAGACCTCCAACTGCAGGAGTCTTTACTGCTCGAGCCGCCGATGATTCTAGCAgatgtgtttctgtgtgaaggaCTCCGACCATCTCATGgagaaataacaacaataaaaaac
>TCONS_00027183
GTTAACAGATCGTCATGTTGCTTAGTTAATCATCTCAACGcaatccacatttctttcatatttaattacctatCAGATAATTtcgcgagtctttcatgcagagaaatctccccaggtctttggataattatgcattcagaagttaTATGTCCATACGCATCTTTATAtgagttcacattgttgttgcagatgaattATAACACGGAAAACGCGATTTAAATGTTTTCCAGCTGGCTAGATGTGaatagtcattcaaacaacttgACGAAGCCTCTGGACGGTTGGTCTCGCGCGTCCGCcatatttgtagtttgtttacactttccCCCCTcaagtttgtagttctaatcgaattcacaTCGGTTAAAGTAAGGACGGTTCTACACACGAATGTTCACCGCAAATAGTCGACCCTCCGAGAACCTTTGGCGTgatcttttcaacatactacggtaaatgaaggtgcagctgcattacagagctcctctatttataataagaagaaaaaagaaaaaaaacctgcaaGTAATAAAGAGATCGAGCTTCAGCAAAGATAATGTCCAGCAGATGGCAGTCAAAGCCCTTCTAATATTCCAGCCTCCTTCCCTCCAGACGCTGCGTGGCACATCATAAACACAAGGCCAAATAATCGTTATCAGGAATGAAGCTTCACTGCTCGCTCATTGTCGGCTCTTCAGAAGTTCACAAAGATCTAGATATGGCCTTGTTTGCGCAGTATAGATTTATGATAGAGAGACCTCCAACTGCAGGAGTCTTTACTGCTCGAGCCGCCGATGATTCTAGCAgatgtgtttctgtgtgaaggaCTCCGACCATCTCATGgagaaataacaacaataaaaaac

Function

GO:

id name namespace
GO:2000058 regulation of ubiquitin-dependent protein catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027182 False 689 lncRNA 0.46 3 48184059 48204254
TCONS_00027183 True 866 lncRNA 0.41 3 48184507 48204254

Neighbor

gene id symbol gene type direction distance location
XLOC_013086 smtla coding upstream 5934 48168755 ~ 48178125 (+)
XLOC_013085 CABZ01086755.1 coding upstream 59171 47990791 ~ 48124888 (+)
XLOC_013084 NA coding upstream 308082 47873344 ~ 47875977 (+)
XLOC_013083 NA coding upstream 374328 47769087 ~ 47809731 (+)
XLOC_013082 NA coding upstream 685868 47444191 ~ 47498191 (+)
XLOC_013088 fli1a coding downstream 219719 48423973 ~ 48487875 (+)
XLOC_013089 CR786562.2 coding downstream 234243 48438497 ~ 48438613 (+)
XLOC_013090 NA coding downstream 319683 48523937 ~ 48556827 (+)
XLOC_013091 kcnj5 coding downstream 372273 48576527 ~ 48643857 (+)
XLOC_013092 CABZ01102201.1 coding downstream 466487 48670741 ~ 48738174 (+)
XLOC_013081 NA non-coding upstream 758155 47380549 ~ 47425904 (+)
XLOC_013098 NA non-coding downstream 920511 49124765 ~ 49156952 (+)
XLOC_013099 BX663503.1 non-coding downstream 989570 49193824 ~ 49215023 (+)
XLOC_013102 CABZ01070258.1 non-coding downstream 1077809 49282063 ~ 49359785 (+)

Expression


Co-expression Network